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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031145 through 18771 annotations produced 1 hits



Nuclear transport factor-2 (Ntf-2):

Annotation Number : CG1740
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031145
Gbrowse : chrX:20906500-20910263 (+) // 100.0 //
Probeset : 1627046_at
Accessions : protein= NP_001097040; /// NP_608422;, nucleotide= NM_001103570; /// NM_134578;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008320 // protein transmembrane transporter activi
FlyMine data for FBgn0031145.
BDGP gene expression has embryonic in situ data for Ntf-2: 4 pix of staining in 1 body parts.
BioGrid reports that CG1740 interacts with CG2199 CG31917 CG32514 CG33193 CG5466 CG6891 CG7570 .
TRiP has 2 RNAi stocks for FBgn0031145 available for purchase.
VDRC has 4 RNAi stocks for FBgn0031145 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain329 ± 54 of 4 1.10None
Head214 ± 224 of 4 0.70Down
Eye295 ± 34 of 4 0.96None
Thoracicoabdominal ganglion317 ± 94 of 4 1.00None
Salivary gland223 ± 44 of 4 0.73Down
Crop287 ± 24 of 4 0.90None
Midgut142 ± 94 of 4 0.50Down
Tubule146 ± 74 of 4 0.50Down
Hindgut217 ± 44 of 4 0.70Down
Heart257 ± 154 of 4 0.84Down
Fat body309 ± 154 of 4 1.01None
Ovary486 ± 64 of 4 1.60Up
Testis73 ± 24 of 4 0.20Down
Male accessory glands123 ± 124 of 4 0.40Down
Virgin spermatheca332 ± 74 of 4 1.08None
Mated spermatheca340 ± 124 of 4 1.11None
Adult carcass224 ± 94 of 4 0.70Down
Larval CNS532 ± 314 of 4 1.73Up
Larval Salivary gland502 ± 94 of 4 1.63Up
Larval midgut190 ± 94 of 4 0.62Down
Larval tubule191 ± 54 of 4 0.60Down
Larval hindgut290 ± 154 of 4 0.95None
Larval fat body263 ± 244 of 4 0.90None
Larval trachea319 ± 204 of 4 1.04None
Larval carcass472 ± 444 of 4 1.53Up
S2 cells (growing)541 ± 34 of 4 1.76Up
Whole fly307 ± 94 of 4

Looking for FBgn0031145. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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