FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031149 through 18771 annotations produced 1 hits

(CG1518):

Annotation Number : CG1518
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031149
Gbrowse : chrX:20920990-20925143 (-) // 100.0 //
Probeset : 1637520_at
Accessions : protein= NP_608425;, nucleotide= NM_134581;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0004576 // oligosaccharyl transferase activity // inferred from sequence or structural similarity /// 0004576 // oligos
FlyMine data for FBgn0031149.
VDRC has 4 RNAi stocks for FBgn0031149 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	371 ± 7	4 of 4	1.20	Up
Head	188 ± 9	4 of 4	0.60	Down
Eye	146 ± 8	4 of 4	0.47	Down
Thoracicoabdominal ganglion	399 ± 3	4 of 4	1.30	Up
Salivary gland	437 ± 16	4 of 4	1.42	Up
Crop	194 ± 4	4 of 4	0.60	Down
Midgut	131 ± 7	4 of 4	0.40	Down
Tubule	157 ± 22	4 of 4	0.50	Down
Hindgut	156 ± 1	4 of 4	0.50	Down
Heart	150 ± 6	4 of 4	0.49	Down
Fat body	149 ± 5	4 of 4	0.48	Down
Ovary	540 ± 9	4 of 4	1.80	Up
Testis	74 ± 1	4 of 4	0.20	Down
Male accessory glands	577 ± 33	4 of 4	1.90	Up
Virgin spermatheca	161 ± 3	4 of 4	0.52	Down
Mated spermatheca	195 ± 11	4 of 4	0.63	Down
Adult carcass	139 ± 10	4 of 4	0.50	Down
Larval CNS	778 ± 9	4 of 4	2.52	Up
Larval Salivary gland	1372 ± 53	4 of 4	4.45	Up
Larval midgut	122 ± 4	4 of 4	0.40	Down
Larval tubule	96 ± 4	4 of 4	0.30	Down
Larval hindgut	356 ± 12	4 of 4	1.15	None
Larval fat body	163 ± 12	4 of 4	0.50	Down
Larval trachea	774 ± 118	4 of 4	2.51	Up
Larval carcass	597 ± 39	4 of 4	1.93	Up
S2 cells (growing)	1330 ± 49	4 of 4	4.31	Up
Whole fly	308 ± 16	4 of 4

Looking for FBgn0031149. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720