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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031157 through 18771 annotations produced 1 hits



(CG1503):

Annotation Number : CG1503
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031157
Gbrowse : chrX:20975889-20977394 (-) // 100.0 //
Probeset : 1628690_at
Accessions : protein= NP_608432;, nucleotide= NM_134588;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008234 // cysteine-type peptidase activity // infe
FlyMine data for FBgn0031157.
BDGP gene expression has embryonic in situ data for CG1503: 4 pix of staining in 1 body parts.
BioGrid reports that CG1503 interacts with CG2128 .
VDRC has 3 RNAi stocks for FBgn0031157 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 10 of 4 0.20Down
Head3 10 of 4 0.10Down
Eye4 10 of 4 0.09Down
Thoracicoabdominal ganglion12 22 of 4 0.30Down
Salivary gland15 40 of 4 0.31Down
Crop4 10 of 4 0.10Down
Midgut6 10 of 4 0.10Down
Tubule7 10 of 4 0.20Down
Hindgut3 00 of 4 0.10Down
Heart2 00 of 4 0.05Down
Fat body8 20 of 4 0.17Down
Ovary38 24 of 4 0.80None
Testis342 184 of 4 7.00Up
Male accessory glands10 40 of 4 0.20Down
Virgin spermatheca7 10 of 4 0.16Down
Mated spermatheca9 10 of 4 0.20Down
Adult carcass9 20 of 4 0.20Down
Larval CNS11 22 of 4 0.23Down
Larval Salivary gland6 20 of 4 0.13Down
Larval midgut5 10 of 4 0.11Down
Larval tubule5 20 of 4 0.10Down
Larval hindgut7 00 of 4 0.14Down
Larval fat body49 173 of 4 1.00None
Larval trachea3 20 of 4 0.08Down
Larval carcass5 20 of 4 0.12Down
S2 cells (growing)74 74 of 4 1.51Up
Whole fly49 34 of 4

Looking for FBgn0031157. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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