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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031164 through 18771 annotations produced 1 hits



(CG1724):

Annotation Number : CG1724
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031164
Gbrowse : chrX:21073520-21074368 (-) // 100.0 //
Probeset : 1630407_at
Accessions : protein= NP_608439;, nucleotide= NM_134595;
Pathway : 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005744 // mitochondrial inner membra
Interpro : 0008565 // protein transporter activity // inferred from electronic annotation /// 0008566 // mitochondrial protein-tran
FlyMine data for FBgn0031164.
VDRC has 2 RNAi stocks for FBgn0031164 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 00 of 4 0.10Down
Eye4 ± 00 of 4 0.13Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland4 ± 10 of 4 0.15Down
Crop2 ± 00 of 4 0.10Down
Midgut6 ± 00 of 4 0.20Down
Tubule4 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart4 ± 00 of 4 0.13Down
Fat body5 ± 20 of 4 0.18Down
Ovary1 ± 00 of 4 0.00Down
Testis306 ± 204 of 4 9.90Up
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.10Down
Mated spermatheca6 ± 00 of 4 0.20Down
Adult carcass7 ± 20 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.04Down
Larval Salivary gland5 ± 10 of 4 0.17Down
Larval midgut5 ± 20 of 4 0.19Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.10Down
Larval fat body33 ± 143 of 4 1.10None
Larval trachea2 ± 21 of 4 0.08Down
Larval carcass5 ± 10 of 4 0.18Down
S2 cells (growing)2 ± 10 of 4 0.09Down
Whole fly30 ± 14 of 4

Looking for FBgn0031164. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime