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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031168 through 18771 annotations produced 1 hits



(CG1722):

Annotation Number : CG1722
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031168
Gbrowse : chrX:21121209-21122175 (-) // 100.0 //
Probeset : 1636851_at
Accessions : protein= NP_608443;, nucleotide= NM_134599;
FlyMine data for FBgn0031168.
BioGrid reports that CG1722 interacts with CG30327 .
VDRC has 3 RNAi stocks for FBgn0031168 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 24 of 4 2.20Up
Head7 21 of 4 0.30Down
Eye23 42 of 4 0.99None
Thoracicoabdominal ganglion39 24 of 4 1.70Up
Salivary gland15 70 of 4 0.68None
Crop26 31 of 4 1.10None
Midgut1 00 of 4 0.10Down
Tubule3 00 of 4 0.20Down
Hindgut18 20 of 4 0.80None
Heart22 13 of 4 0.98None
Fat body42 114 of 4 1.79Up
Ovary7 11 of 4 0.30Down
Testis313 74 of 413.40Up
Male accessory glands10 20 of 4 0.50Down
Virgin spermatheca20 20 of 4 0.86None
Mated spermatheca17 50 of 4 0.75None
Adult carcass15 50 of 4 0.60None
Larval CNS19 33 of 4 0.82None
Larval Salivary gland14 30 of 4 0.61None
Larval midgut1 00 of 4 0.07Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut12 10 of 4 0.55Down
Larval fat body53 84 of 4 2.30Up
Larval trachea25 32 of 4 1.10None
Larval carcass4 00 of 4 0.17Down
S2 cells (growing)16 10 of 4 0.71None
Whole fly23 34 of 4

Looking for FBgn0031168. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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