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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031170 through 18771 annotations produced 1 hits


Annotation Number : CG1718
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031170
Gbrowse : chrX:21163740-21171389 (-) // 100.0 //
Probeset : 1641152_at
Accessions : protein= NP_608445;, nucleotide= NM_134601;
Pathway : 0043190 // ATP-binding cassette (ABC) transporter complex // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0031170.
Homophila reports that CG1718 is a close match (4e-11) to human gene ABCB7;ABC7;ASAT (NP_004290), a gene associated with Anemia, sideroblastic, with ataxia, 301310 (3).
TRiP has 2 RNAi stocks for FBgn0031170 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031170 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain174 94 of 4 1.60None
Head77 64 of 4 0.70Down
Eye52 24 of 4 0.49Down
Thoracicoabdominal ganglion131 74 of 4 1.20None
Salivary gland55 43 of 4 0.52Down
Crop129 84 of 4 1.20None
Midgut787 594 of 4 7.40Up
Tubule89 54 of 4 0.80Down
Hindgut307 134 of 4 2.90Up
Heart107 74 of 4 1.01None
Fat body97 114 of 4 0.91None
Ovary101 34 of 4 0.90None
Testis24 14 of 4 0.20Down
Male accessory glands90 154 of 4 0.80None
Virgin spermatheca32 24 of 4 0.30Down
Mated spermatheca33 24 of 4 0.31Down
Adult carcass99 34 of 4 0.90None
Larval CNS86 134 of 4 0.80None
Larval Salivary gland14 23 of 4 0.13Down
Larval midgut1586 644 of 414.82Up
Larval tubule63 44 of 4 0.60Down
Larval hindgut359 204 of 4 3.36Up
Larval fat body13 10 of 4 0.10Down
Larval trachea27 54 of 4 0.26Down
Larval carcass25 24 of 4 0.24Down
S2 cells (growing)133 44 of 4 1.25Up
Whole fly107 64 of 4

Looking for FBgn0031170. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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