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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031174 through 18771 annotations produced 1 hits



(CG1486):

Annotation Number : CG1486
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031174
Gbrowse : chrX:21195071-21199176 (+) // 100.0 //
Probeset : 1636928_s_at
Accessions : protein= NP_608450; /// NP_728413;, nucleotide= NM_134606; /// NM_167743;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0031174.
BDGP gene expression has embryonic in situ data for CG1486: 18 pix of staining in 6 body parts.
BioGrid reports that CG1486 interacts with CG15150 CG15712 CG7712 CG4116 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain343 164 of 4 2.30Up
Head195 114 of 4 1.30Up
Eye111 74 of 4 0.76Down
Thoracicoabdominal ganglion318 114 of 4 2.20Up
Salivary gland1759 544 of 412.04Up
Crop182 74 of 4 1.20Up
Midgut326 94 of 4 2.20Up
Tubule325 164 of 4 2.20Up
Hindgut246 44 of 4 1.70Up
Heart112 74 of 4 0.77Down
Fat body254 134 of 4 1.74Up
Ovary205 14 of 4 1.40Up
Testis33 44 of 4 0.20Down
Male accessory glands1015 404 of 4 6.90Up
Virgin spermatheca385 144 of 4 2.64Up
Mated spermatheca414 114 of 4 2.84Up
Adult carcass134 54 of 4 0.90None
Larval CNS348 314 of 4 2.39Up
Larval Salivary gland1360 994 of 4 9.31Up
Larval midgut411 84 of 4 2.82Up
Larval tubule327 94 of 4 2.20Up
Larval hindgut350 74 of 4 2.40Up
Larval fat body182 144 of 4 1.20None
Larval trachea132 184 of 4 0.90None
Larval carcass245 84 of 4 1.68Up
S2 cells (growing)299 114 of 4 2.05Up
Whole fly146 84 of 4

Looking for FBgn0031174. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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