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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031176 through 18771 annotations produced 1 hits



(CG1678):

Annotation Number : CG1678
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031176
Gbrowse : chrX:21273399-21273765 (-) // 100.0 //
Probeset : 1640157_at
Accessions : protein= NP_608451;, nucleotide= NM_134607;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031176.
BioGrid reports that CG1678 interacts with CG17769 CG3114 .
VDRC has 2 RNAi stocks for FBgn0031176 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 10 of 4 0.00Down
Head1221 ± 5244 of 4 0.30Down
Eye453 ± 4333 of 4 0.12Down
Thoracicoabdominal ganglion2718 ± 7644 of 4 0.70None
Salivary gland12061 ± 7054 of 4 3.14Up
Crop6390 ± 5164 of 4 1.70Up
Midgut29 ± 20 of 4 0.00Down
Tubule406 ± 3900 of 4 0.10Down
Hindgut17 ± 20 of 4 0.00Down
Heart40 ± 74 of 4 0.01Down
Fat body155 ± 2102 of 4 0.04Down
Ovary8 ± 20 of 4 0.00Down
Testis16 ± 20 of 4 0.00Down
Male accessory glands27 ± 50 of 4 0.00Down
Virgin spermatheca44 ± 102 of 4 0.01Down
Mated spermatheca31 ± 10 of 4 0.01Down
Adult carcass6044 ± 3784 of 4 1.60Up
Larval CNS13 ± 20 of 4 0.00Down
Larval Salivary gland14 ± 30 of 4 0.00Down
Larval midgut59 ± 101 of 4 0.02Down
Larval tubule26 ± 30 of 4 0.00Down
Larval hindgut17 ± 40 of 4 0.00Down
Larval fat body25 ± 60 of 4 0.00Down
Larval trachea9 ± 60 of 4 0.00Down
Larval carcass15 ± 60 of 4 0.00Down
S2 cells (growing)18 ± 20 of 4 0.00Down
Whole fly3845 ± 2304 of 4

Looking for FBgn0031176. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime