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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031178 through 18771 annotations produced 1 hits



(CG10918):

Annotation Number : CG10918
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031178
Gbrowse : chrX:21299718-21300270 (-) // 100.0 //
Probeset : 1637902_at
Accessions : protein= NP_608453;, nucleotide= NM_134609;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031178.
BioGrid reports that CG10918 interacts with CG11982 CG1469 CG31122 CG3294 CG8085 CG8581 .
VDRC has 1 RNAi stocks for FBgn0031178 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 00 of 4 1.70Up
Head6 ± 20 of 4 1.60None
Eye2 ± 00 of 4 0.71None
Thoracicoabdominal ganglion5 ± 20 of 4 1.30None
Salivary gland92 ± 83 of 422.59Up
Crop9 ± 20 of 4 2.40None
Midgut2 ± 00 of 4 0.50Down
Tubule3 ± 00 of 4 0.90None
Hindgut9 ± 20 of 4 2.30None
Heart4 ± 10 of 4 1.06None
Fat body2 ± 00 of 4 0.57None
Ovary2 ± 10 of 4 0.60None
Testis0 ± 00 of 4 0.20Down
Male accessory glands3 ± 10 of 4 0.90None
Virgin spermatheca2 ± 00 of 4 0.51Down
Mated spermatheca2 ± 00 of 4 0.65None
Adult carcass5 ± 20 of 4 1.30None
Larval CNS2 ± 00 of 4 0.62None
Larval Salivary gland4418 ± 3144 of 41077.79Up
Larval midgut2 ± 00 of 4 0.60None
Larval tubule2 ± 10 of 4 0.70None
Larval hindgut2 ± 00 of 4 0.51None
Larval fat body10 ± 20 of 4 2.40None
Larval trachea13 ± 201 of 4 3.23None
Larval carcass1 ± 00 of 4 0.34Down
S2 cells (growing)5 ± 00 of 4 1.26None
Whole fly4 ± 00 of 4

Looking for FBgn0031178. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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