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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031183 through 18771 annotations produced 1 hits



(CG14621):

Annotation Number : CG14621
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031183
Gbrowse : chrX:21846589-21849017 (+) // 100.0 //
Probeset : 1636681_at
Accessions : protein= NP_608458;, nucleotide= NM_134614;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0008524 // glucose 6-phosphate:phosphate antiporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0031183.
BDGP gene expression has embryonic in situ data for CG14621: 4 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0031183 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 ± 24 of 4 0.90None
Head65 ± 64 of 4 0.70Down
Eye39 ± 34 of 4 0.43Down
Thoracicoabdominal ganglion58 ± 34 of 4 0.60Down
Salivary gland321 ± 234 of 4 3.50Up
Crop64 ± 54 of 4 0.70Down
Midgut57 ± 14 of 4 0.60Down
Tubule30 ± 44 of 4 0.30Down
Hindgut48 ± 24 of 4 0.50Down
Heart53 ± 24 of 4 0.58Down
Fat body70 ± 114 of 4 0.77Down
Ovary201 ± 54 of 4 2.20Up
Testis134 ± 74 of 4 1.50Up
Male accessory glands244 ± 344 of 4 2.70Up
Virgin spermatheca30 ± 24 of 4 0.33Down
Mated spermatheca46 ± 44 of 4 0.50Down
Adult carcass71 ± 54 of 4 0.80Down
Larval CNS54 ± 64 of 4 0.60Down
Larval Salivary gland357 ± 474 of 4 3.89Up
Larval midgut40 ± 14 of 4 0.44Down
Larval tubule77 ± 44 of 4 0.80None
Larval hindgut48 ± 24 of 4 0.53Down
Larval fat body81 ± 84 of 4 0.90None
Larval trachea40 ± 54 of 4 0.44Down
Larval carcass45 ± 54 of 4 0.50Down
S2 cells (growing)110 ± 34 of 4 1.20Up
Whole fly91 ± 64 of 4

Looking for FBgn0031183. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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