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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031188 through 18771 annotations produced 1 hits



(CG14613):

Annotation Number : CG14613
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031188
Gbrowse : chrX:21872093-21873811 (-) // 100.0 //
Probeset : 1638185_at
Accessions : protein= NP_608463;, nucleotide= NM_134619;
FlyMine data for FBgn0031188.
BDGP gene expression has embryonic in situ data for CG14613: 4 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 ± 44 of 4 0.60Down
Head54 ± 44 of 4 0.40Down
Eye46 ± 44 of 4 0.33Down
Thoracicoabdominal ganglion68 ± 14 of 4 0.50Down
Salivary gland126 ± 164 of 4 0.90None
Crop89 ± 24 of 4 0.60Down
Midgut68 ± 44 of 4 0.50Down
Tubule75 ± 24 of 4 0.50Down
Hindgut89 ± 34 of 4 0.60Down
Heart63 ± 14 of 4 0.45Down
Fat body55 ± 44 of 4 0.39Down
Ovary234 ± 44 of 4 1.70Up
Testis227 ± 34 of 4 1.60Up
Male accessory glands131 ± 144 of 4 0.90None
Virgin spermatheca38 ± 14 of 4 0.27Down
Mated spermatheca42 ± 34 of 4 0.30Down
Adult carcass67 ± 44 of 4 0.50Down
Larval CNS97 ± 84 of 4 0.69Down
Larval Salivary gland86 ± 44 of 4 0.62Down
Larval midgut79 ± 34 of 4 0.56Down
Larval tubule57 ± 34 of 4 0.40Down
Larval hindgut93 ± 34 of 4 0.66Down
Larval fat body75 ± 114 of 4 0.50Down
Larval trachea137 ± 44 of 4 0.98None
Larval carcass83 ± 34 of 4 0.59Down
S2 cells (growing)212 ± 54 of 4 1.51Up
Whole fly141 ± 94 of 4

Looking for FBgn0031188. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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