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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031190 through 18771 annotations produced 1 hits


Annotation Number : CG12576
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031190
Gbrowse : chrX:21876680-21883923 (-) // 100.0 //
Probeset : 1636896_a_at
Accessions : protein= NP_608465; /// NP_728457;, nucleotide= NM_134621; /// NM_167779;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031190.
BDGP gene expression has embryonic in situ data for CG12576: 13 pix of staining in 24 body parts.
BioGrid reports that CG12576 interacts with CG12841 CG2898 CG5148 CG7542 CG14606 CG3186 CG7048 CG7450 CG7981 .
TRiP has 1 RNAi stocks for FBgn0031190 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031190 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain415 154 of 4 1.10None
Head331 104 of 4 0.90None
Eye157 84 of 4 0.42Down
Thoracicoabdominal ganglion334 94 of 4 0.90None
Salivary gland432 174 of 4 1.16None
Crop606 244 of 4 1.60Up
Midgut834 284 of 4 2.20Up
Tubule707 534 of 4 1.90Up
Hindgut687 124 of 4 1.80Up
Heart395 104 of 4 1.06None
Fat body448 184 of 4 1.20Up
Ovary563 84 of 4 1.50Up
Testis44 24 of 4 0.10Down
Male accessory glands945 524 of 4 2.50Up
Virgin spermatheca693 324 of 4 1.86Up
Mated spermatheca569 164 of 4 1.52Up
Adult carcass445 164 of 4 1.20Up
Larval CNS321 434 of 4 0.86None
Larval Salivary gland209 114 of 4 0.56Down
Larval midgut559 354 of 4 1.50Up
Larval tubule925 564 of 4 2.50Up
Larval hindgut459 394 of 4 1.23None
Larval fat body133 104 of 4 0.40Down
Larval trachea537 624 of 4 1.44Up
Larval carcass686 924 of 4 1.84Up
S2 cells (growing)360 114 of 4 0.96None
Whole fly373 204 of 4

Looking for FBgn0031190. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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