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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031194 through 18771 annotations produced 1 hits



(CG17598):

Annotation Number : CG17598
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031194
Gbrowse : chrX:21938272-21942177 (-) // 100.0 //
Probeset : 1632433_at
Accessions : protein= NP_608468;, nucleotide= NM_134624;
Pathway : 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity
FlyMine data for FBgn0031194.
BDGP gene expression has embryonic in situ data for CG17598: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0031194 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031194 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 24 of 4 1.80Up
Head67 44 of 4 1.00None
Eye66 24 of 4 0.98None
Thoracicoabdominal ganglion155 54 of 4 2.30Up
Salivary gland99 54 of 4 1.46Up
Crop45 44 of 4 0.70Down
Midgut50 14 of 4 0.70Down
Tubule91 64 of 4 1.30Up
Hindgut64 14 of 4 0.90None
Heart48 24 of 4 0.71Down
Fat body66 64 of 4 0.97None
Ovary162 44 of 4 2.40Up
Testis13 14 of 4 0.20Down
Male accessory glands95 64 of 4 1.40Up
Virgin spermatheca104 74 of 4 1.53Up
Mated spermatheca97 54 of 4 1.42Up
Adult carcass41 04 of 4 0.60Down
Larval CNS147 114 of 4 2.16Up
Larval Salivary gland166 124 of 4 2.44Up
Larval midgut74 24 of 4 1.09None
Larval tubule112 24 of 4 1.70Up
Larval hindgut81 64 of 4 1.20None
Larval fat body98 74 of 4 1.40Up
Larval trachea46 104 of 4 0.69Down
Larval carcass31 14 of 4 0.46Down
S2 cells (growing)74 64 of 4 1.10None
Whole fly68 44 of 4

Looking for FBgn0031194. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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