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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031195 through 18771 annotations produced 1 hits



(CG17600):

Annotation Number : CG17600
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031195
Gbrowse : chrX:21917034-21943860 (+) // 100.0 //
Probeset : 1641117_a_at
Accessions : protein= NP_608469; /// NP_728465;, nucleotide= NM_134625; /// NM_167787;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031195.
BDGP gene expression has embryonic in situ data for CG17600: 10 pix of staining in 10 body parts.
BioGrid reports that CG17600 interacts with CG9745 .
VDRC has 5 RNAi stocks for FBgn0031195 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain167 ± 34 of 4 2.10Up
Head73 ± 54 of 4 0.90None
Eye90 ± 34 of 4 1.13None
Thoracicoabdominal ganglion115 ± 44 of 4 1.50Up
Salivary gland232 ± 174 of 4 2.92Up
Crop81 ± 44 of 4 1.00None
Midgut50 ± 24 of 4 0.60Down
Tubule34 ± 24 of 4 0.40Down
Hindgut71 ± 24 of 4 0.90None
Heart45 ± 34 of 4 0.57Down
Fat body35 ± 54 of 4 0.44Down
Ovary151 ± 34 of 4 1.90Up
Testis69 ± 34 of 4 0.90None
Male accessory glands88 ± 44 of 4 1.10None
Virgin spermatheca53 ± 54 of 4 0.68Down
Mated spermatheca46 ± 44 of 4 0.59Down
Adult carcass46 ± 34 of 4 0.60Down
Larval CNS149 ± 154 of 4 1.87Up
Larval Salivary gland75 ± 64 of 4 0.94None
Larval midgut50 ± 44 of 4 0.63Down
Larval tubule92 ± 44 of 4 1.20Up
Larval hindgut137 ± 94 of 4 1.72Up
Larval fat body62 ± 24 of 4 0.80Down
Larval trachea108 ± 84 of 4 1.36Up
Larval carcass111 ± 84 of 4 1.39Up
S2 cells (growing)122 ± 14 of 4 1.54Up
Whole fly79 ± 24 of 4

Looking for FBgn0031195. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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