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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031196 through 18771 annotations produced 1 hits


Annotation Number : CG17599
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031196
Gbrowse : chrX:21944285-21946059 (-) // 100.0 //
Probeset : 1628749_at
Accessions : protein= NP_608470;, nucleotide= NM_134626;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031196.
BioGrid reports that CG17599 interacts with CG17778 CG5717 CG6856 CG8697 CG9740 CG17660 CG2054 CG2213 CG3922 CG4617 CG4735 CG4898 CG5053 CG5343 CG6497 CG6944 .
VDRC has 2 RNAi stocks for FBgn0031196 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 1.80None
Head12 11 of 4 6.40Up
Eye3 00 of 4 1.56None
Thoracicoabdominal ganglion7 10 of 4 3.80Up
Salivary gland7 20 of 4 3.52None
Crop5 20 of 4 2.80None
Midgut1 10 of 4 0.90None
Tubule3 00 of 4 1.60Up
Hindgut3 10 of 4 1.60None
Heart3 10 of 4 1.90None
Fat body4 40 of 4 2.49None
Ovary2 10 of 4 1.30None
Testis5 11 of 4 2.70None
Male accessory glands8 20 of 4 4.00None
Virgin spermatheca4 10 of 4 2.19None
Mated spermatheca7 21 of 4 3.58None
Adult carcass16 20 of 4 8.30Up
Larval CNS3 20 of 4 1.59None
Larval Salivary gland6 20 of 4 3.41None
Larval midgut1 00 of 4 0.96None
Larval tubule4 10 of 4 2.50None
Larval hindgut3 20 of 4 1.99None
Larval fat body3 20 of 4 2.00None
Larval trachea6 12 of 4 3.44Up
Larval carcass4 20 of 4 2.34None
S2 cells (growing)7 10 of 4 3.71Up
Whole fly2 10 of 4

Looking for FBgn0031196. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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