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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031197 through 18771 annotations produced 1 hits



(CG17601):

Annotation Number : CG17601
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031197
Gbrowse : chrX:21948965-21949628 (+) // 100.0 //
Probeset : 1630595_at
Accessions : protein= NP_608471;, nucleotide= NM_134627;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031197.
BioGrid reports that CG17601 interacts with CG6998 CG5450 .
VDRC has 2 RNAi stocks for FBgn0031197 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.70None
Head1 ± 10 of 4 1.10None
Eye1 ± 00 of 4 0.76None
Thoracicoabdominal ganglion2 ± 10 of 4 1.50None
Salivary gland5 ± 30 of 4 3.66None
Crop1 ± 00 of 4 0.60None
Midgut3 ± 20 of 4 2.10None
Tubule1 ± 00 of 4 1.00None
Hindgut1 ± 00 of 4 0.90None
Heart2 ± 11 of 4 1.31None
Fat body1 ± 10 of 4 0.92None
Ovary1 ± 00 of 4 0.80None
Testis7 ± 20 of 4 4.50None
Male accessory glands2 ± 10 of 4 1.80None
Virgin spermatheca0 ± 00 of 4 0.60None
Mated spermatheca1 ± 00 of 4 1.15None
Adult carcass1 ± 00 of 4 1.20None
Larval CNS0 ± 00 of 4 0.42None
Larval Salivary gland2 ± 00 of 4 1.35None
Larval midgut2 ± 00 of 4 1.55None
Larval tubule1 ± 00 of 4 1.00None
Larval hindgut1 ± 00 of 4 0.74None
Larval fat body1 ± 00 of 4 0.80None
Larval trachea2 ± 20 of 4 1.65None
Larval carcass3 ± 10 of 4 2.13None
S2 cells (growing)0 ± 00 of 4 0.45None
Whole fly1 ± 00 of 4

Looking for FBgn0031197. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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