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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031213 through 18771 annotations produced 1 hits



galectin (galectin):

Annotation Number : CG11372
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031213
Gbrowse : chr2L:72387-76203 (+) // 100.0 //
Probeset : 1634650_at
Accessions : protein= NP_001162837; /// NP_001162838; /// NP_608487;, nucleotide= NM_001169366; /// NM_001169367; /// NM_134643;
Pathway : 0005829 // cytosol // inferred from direct assay
Interpro : 0005529 // sugar binding // inferred from electronic annotation /// 0015143 // urate transmembrane transporter activity
FlyMine data for FBgn0031213.
BDGP gene expression has embryonic in situ data for galectin: 11 pix of staining in 10 body parts.
BioGrid reports that CG11372 interacts with CG33275 .
TRiP has 1 RNAi stocks for FBgn0031213 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031213 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain678 ± 164 of 4 2.00Up
Head477 ± 64 of 4 1.40Up
Eye505 ± 204 of 4 1.51Up
Thoracicoabdominal ganglion853 ± 104 of 4 2.60Up
Salivary gland477 ± 274 of 4 1.42Up
Crop657 ± 114 of 4 2.00Up
Midgut400 ± 64 of 4 1.20Up
Tubule464 ± 104 of 4 1.40Up
Hindgut702 ± 214 of 4 2.10Up
Heart649 ± 314 of 4 1.94Up
Fat body641 ± 284 of 4 1.92Up
Ovary589 ± 144 of 4 1.80Up
Testis91 ± 14 of 4 0.30Down
Male accessory glands246 ± 154 of 4 0.70Down
Virgin spermatheca777 ± 604 of 4 2.32Up
Mated spermatheca775 ± 274 of 4 2.32Up
Adult carcass537 ± 174 of 4 1.60Up
Larval CNS435 ± 184 of 4 1.30Up
Larval Salivary gland773 ± 464 of 4 2.31Up
Larval midgut449 ± 114 of 4 1.34Up
Larval tubule465 ± 134 of 4 1.40Up
Larval hindgut620 ± 154 of 4 1.85Up
Larval fat body744 ± 614 of 4 2.20Up
Larval trachea775 ± 164 of 4 2.32Up
Larval carcass580 ± 354 of 4 1.73Up
S2 cells (growing)885 ± 94 of 4 2.65Up
Whole fly334 ± 164 of 4

Looking for FBgn0031213. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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