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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031216 through 18771 annotations produced 1 hits



(CG11376):

Annotation Number : CG11376
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031216
Gbrowse : chr2L:94751-102086 (+) // 100.0 //
Probeset : 1637327_at
Accessions : protein= NP_608489;, nucleotide= NM_134645;
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005525 // GTP binding
FlyMine data for FBgn0031216.
BDGP gene expression has embryonic in situ data for CG11376: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0031216 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031216 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain212 ± 94 of 4 1.90Up
Head129 ± 44 of 4 1.20Up
Eye106 ± 64 of 4 0.97None
Thoracicoabdominal ganglion166 ± 54 of 4 1.50Up
Salivary gland128 ± 44 of 4 1.17Up
Crop154 ± 94 of 4 1.40Up
Midgut78 ± 34 of 4 0.70Down
Tubule111 ± 34 of 4 1.00None
Hindgut118 ± 34 of 4 1.10None
Heart151 ± 64 of 4 1.39Up
Fat body109 ± 124 of 4 1.00None
Ovary292 ± 54 of 4 2.70Up
Testis37 ± 24 of 4 0.30Down
Male accessory glands189 ± 54 of 4 1.70Up
Virgin spermatheca115 ± 54 of 4 1.05None
Mated spermatheca108 ± 24 of 4 0.99None
Adult carcass92 ± 64 of 4 0.80None
Larval CNS420 ± 454 of 4 3.84Up
Larval Salivary gland153 ± 34 of 4 1.40Up
Larval midgut90 ± 84 of 4 0.82None
Larval tubule218 ± 54 of 4 2.00Up
Larval hindgut165 ± 54 of 4 1.51Up
Larval fat body100 ± 104 of 4 0.90None
Larval trachea234 ± 104 of 4 2.14Up
Larval carcass121 ± 44 of 4 1.11None
S2 cells (growing)119 ± 24 of 4 1.09None
Whole fly109 ± 44 of 4

Looking for FBgn0031216. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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