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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031217 through 18771 annotations produced 1 hits


Annotation Number : CG11377
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031217
Gbrowse : chr2L:102381-104142 (+) // 99.75 //
Probeset : 1633661_at
Accessions : protein= NP_608490;, nucleotide= NM_134646;
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0031217.
Homophila reports that CG11377 is a close match (1e-52) to human gene AVSD2;CRELD1 (NP_001026887), a gene associated with Atrioventricular septal defect, partial, with heterotaxy syndrome, 606217 (3);{Atrioventricular septal defect, susceptibility to, 2}, 606217 (3).
BioGrid reports that CG11377 interacts with CG6963 CG11833 CG11893 CG13811 CG15043 CG15482 CG30011 CG3201 CG32852 CG3911 CG4209 CG4651 CG4853 CG5325 CG6703 CG6808 CG7427 .
VDRC has 1 RNAi stocks for FBgn0031217 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain250 34 of 4 1.30Up
Head183 54 of 4 0.90None
Eye182 64 of 4 0.93None
Thoracicoabdominal ganglion275 104 of 4 1.40Up
Salivary gland394 284 of 4 2.00Up
Crop108 04 of 4 0.50Down
Midgut222 74 of 4 1.10None
Tubule107 154 of 4 0.50Down
Hindgut97 74 of 4 0.50Down
Heart396 104 of 4 2.01Up
Fat body310 154 of 4 1.57Up
Ovary375 74 of 4 1.90Up
Testis48 14 of 4 0.20Down
Male accessory glands757 414 of 4 3.80Up
Virgin spermatheca336 94 of 4 1.70Up
Mated spermatheca423 264 of 4 2.14Up
Adult carcass249 94 of 4 1.30Up
Larval CNS288 94 of 4 1.46Up
Larval Salivary gland527 324 of 4 2.67Up
Larval midgut95 64 of 4 0.48Down
Larval tubule40 14 of 4 0.20Down
Larval hindgut70 14 of 4 0.35Down
Larval fat body176 154 of 4 0.90None
Larval trachea214 324 of 4 1.09None
Larval carcass74 24 of 4 0.38Down
S2 cells (growing)613 94 of 4 3.11Up
Whole fly197 134 of 4

Looking for FBgn0031217. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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