FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031220 through 18771 annotations produced 1 hits

(CG4822):

Annotation Number : CG4822
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031220
Gbrowse : chr2L:117078-121751 (-) // 100.0 //
Probeset : 1634583_s_at
Accessions : protein= NP_001033861; /// NP_001033862; /// NP_001033863; /// NP_001033864; /// NP_608493; /// NP_722602; /// NP_722603; /// NP_722604;, nucleotide= NM_001038772; /// NM_001038773; /// NM_001038774; /// NM_001038775; /// NM_134649; /// NM_164363; /// NM_164364; /// NM_164365;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from el
FlyMine data for FBgn0031220.
Homophila reports that CG4822 is a close match (4e-12) to human gene ABCB1;IBD13;MDR1;PGY1 (NP_000918), a gene associated with Colchicine resistance (3);{Inflammatory bowel disease 13, susceptibility to}, 612244 (3).
TRiP has 1 RNAi stocks for FBgn0031220 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031220 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	46 ± 2	4 of 4	0.30	Down
Head	493 ± 25	4 of 4	2.80	Up
Eye	266 ± 23	4 of 4	1.49	Up
Thoracicoabdominal ganglion	39 ± 3	4 of 4	0.20	Down
Salivary gland	15 ± 5	1 of 4	0.09	Down
Crop	622 ± 24	4 of 4	3.50	Up
Midgut	13 ± 2	2 of 4	0.10	Down
Tubule	16 ± 2	2 of 4	0.10	Down
Hindgut	17 ± 2	4 of 4	0.10	Down
Heart	929 ± 21	4 of 4	5.21	Up
Fat body	1147 ± 162	4 of 4	6.43	Up
Ovary	11 ± 1	4 of 4	0.10	Down
Testis	13 ± 1	4 of 4	0.10	Down
Male accessory glands	39 ± 3	4 of 4	0.20	Down
Virgin spermatheca	502 ± 76	4 of 4	2.81	Up
Mated spermatheca	817 ± 37	4 of 4	4.58	Up
Adult carcass	832 ± 37	4 of 4	4.70	Up
Larval CNS	32 ± 2	4 of 4	0.18	Down
Larval Salivary gland	11 ± 3	3 of 4	0.06	Down
Larval midgut	22 ± 5	3 of 4	0.12	Down
Larval tubule	465 ± 61	4 of 4	2.60	Up
Larval hindgut	11 ± 1	4 of 4	0.07	Down
Larval fat body	3700 ± 332	4 of 4	20.70	Up
Larval trachea	45 ± 7	4 of 4	0.25	Down
Larval carcass	392 ± 42	4 of 4	2.20	Up
S2 cells (growing)	2066 ± 48	4 of 4	11.57	Up
Whole fly	178 ± 14	4 of 4

Looking for FBgn0031220. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720