FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031229 through 18771 annotations produced 3 hits

(CG3436):

Annotation Number : CG3436
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031229
Gbrowse : chr2L:156028-156625 (+) // 100.0 //
Probeset : 1632171_a_at
Accessions : protein= NP_608501; /// NP_722614;, nucleotide= NM_134657; /// NM_164373;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity"
FlyMine data for FBgn0031229.
BDGP gene expression has embryonic in situ data for CG3436: 31 pix of staining in 14 body parts.
Homophila reports that CG3436 is a close match (5e-13) to human gene CFEOM1;FEOM1;KIAA1708;KIF21A (NP_060111), a gene associated with Fibrosis of extraocular muscles, congenital, 1, 135700 (3).
VDRC has 1 RNAi stocks for FBgn0031229 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	86 ± 5	4 of 4	1.30	Up
Head	42 ± 4	4 of 4	0.60	Down
Eye	44 ± 2	4 of 4	0.66	Down
Thoracicoabdominal ganglion	55 ± 3	4 of 4	0.80	None
Salivary gland	41 ± 2	4 of 4	0.62	Down
Crop	68 ± 5	4 of 4	1.00	None
Midgut	54 ± 4	4 of 4	0.80	None
Tubule	10 ± 1	2 of 4	0.10	Down
Hindgut	43 ± 4	4 of 4	0.60	Down
Heart	33 ± 3	4 of 4	0.50	Down
Fat body	35 ± 9	4 of 4	0.52	Down
Ovary	170 ± 8	4 of 4	2.50	Up
Testis	16 ± 1	4 of 4	0.20	Down
Male accessory glands	50 ± 6	4 of 4	0.70	None
Virgin spermatheca	9 ± 0	3 of 4	0.13	Down
Mated spermatheca	9 ± 0	2 of 4	0.14	Down
Adult carcass	39 ± 2	4 of 4	0.60	Down
Larval CNS	86 ± 17	4 of 4	1.29	None
Larval Salivary gland	69 ± 7	4 of 4	1.03	None
Larval midgut	38 ± 3	4 of 4	0.57	Down
Larval tubule	80 ± 3	4 of 4	1.20	Up
Larval hindgut	38 ± 4	4 of 4	0.57	Down
Larval fat body	69 ± 10	4 of 4	1.00	None
Larval trachea	58 ± 8	4 of 4	0.87	None
Larval carcass	33 ± 3	4 of 4	0.50	Down
S2 cells (growing)	75 ± 3	4 of 4	1.12	None
Whole fly	67 ± 4	4 of 4

(CG3436):

Annotation Number : CG3436
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031229
Gbrowse : chr2L:156028-157666 (+) // 100.0 //
Probeset : 1633301_at
Accessions : protein= NP_608501; /// NP_722614;, nucleotide= NM_134657; /// NM_164373;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity"
FlyMine data for FBgn0031229.
BDGP gene expression has embryonic in situ data for CG3436: 31 pix of staining in 14 body parts.
Homophila reports that CG3436 is a close match (5e-13) to human gene CFEOM1;FEOM1;KIAA1708;KIF21A (NP_060111), a gene associated with Fibrosis of extraocular muscles, congenital, 1, 135700 (3).
VDRC has 1 RNAi stocks for FBgn0031229 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	281 ± 8	4 of 4	0.90	None
Head	226 ± 5	4 of 4	0.80	Down
Eye	237 ± 3	4 of 4	0.80	Down
Thoracicoabdominal ganglion	242 ± 15	4 of 4	0.80	Down
Salivary gland	172 ± 6	4 of 4	0.58	Down
Crop	276 ± 6	4 of 4	0.90	None
Midgut	188 ± 2	4 of 4	0.60	Down
Tubule	369 ± 31	4 of 4	1.20	Up
Hindgut	190 ± 7	4 of 4	0.60	Down
Heart	166 ± 10	4 of 4	0.56	Down
Fat body	173 ± 19	4 of 4	0.58	Down
Ovary	582 ± 8	4 of 4	2.00	Up
Testis	69 ± 4	4 of 4	0.20	Down
Male accessory glands	267 ± 6	4 of 4	0.90	None
Virgin spermatheca	187 ± 1	4 of 4	0.63	Down
Mated spermatheca	205 ± 12	4 of 4	0.69	Down
Adult carcass	145 ± 5	4 of 4	0.50	Down
Larval CNS	432 ± 29	4 of 4	1.45	Up
Larval Salivary gland	399 ± 15	4 of 4	1.34	Up
Larval midgut	188 ± 8	4 of 4	0.63	Down
Larval tubule	338 ± 4	4 of 4	1.10	Up
Larval hindgut	241 ± 15	4 of 4	0.81	Down
Larval fat body	226 ± 17	4 of 4	0.80	Down
Larval trachea	260 ± 34	4 of 4	0.88	None
Larval carcass	218 ± 5	4 of 4	0.73	Down
S2 cells (growing)	297 ± 2	4 of 4	1.00	None
Whole fly	297 ± 10	4 of 4

NADH ubiquinone oxidoreductase 15 kDa /// (CG11455 /// CG3436):

Annotation Number : CG11455
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031228
Gbrowse : chr2L:155336-156017 (+) // 100.0 //
Probeset : 1634783_s_at
Accessions : protein= NP_001162841; /// NP_001162842; /// NP_001162843; /// NP_722612; /// NP_722613;, nucleotide= NM_001169370; /// NM_001169371; /// NM_001169372; /// NM_164371; /// NM_164372;
Pathway : via spliceosome // inferred from sequence similarity /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from curator /// 0006120 // mitochondrial electron transport
FlyMine data for FBgn0031228.
BDGP gene expression has embryonic in situ data for CG11455: 13 pix of staining in 12 body parts.
BioGrid reports that CG11455 interacts with CG6195 CG14478 CG6667 .
VDRC has 2 RNAi stocks for FBgn0031228 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	933 ± 11	4 of 4	1.20	Up
Head	1161 ± 20	4 of 4	1.50	Up
Eye	1580 ± 45	4 of 4	2.07	Up
Thoracicoabdominal ganglion	1217 ± 50	4 of 4	1.60	Up
Salivary gland	1669 ± 54	4 of 4	2.19	Up
Crop	1000 ± 45	4 of 4	1.30	Up
Midgut	1221 ± 33	4 of 4	1.60	Up
Tubule	1139 ± 21	4 of 4	1.50	Up
Hindgut	1358 ± 29	4 of 4	1.80	Up
Heart	1154 ± 32	4 of 4	1.52	Up
Fat body	1477 ± 65	4 of 4	1.94	Up
Ovary	572 ± 7	4 of 4	0.80	Down
Testis	631 ± 7	4 of 4	0.80	Down
Male accessory glands	804 ± 15	4 of 4	1.10	None
Virgin spermatheca	2032 ± 81	4 of 4	2.67	Up
Mated spermatheca	1669 ± 102	4 of 4	2.19	Up
Adult carcass	1575 ± 101	4 of 4	2.10	Up
Larval CNS	745 ± 40	4 of 4	0.98	None
Larval Salivary gland	1104 ± 40	4 of 4	1.45	Up
Larval midgut	1348 ± 31	4 of 4	1.77	Up
Larval tubule	1122 ± 60	4 of 4	1.50	Up
Larval hindgut	1492 ± 49	4 of 4	1.96	Up
Larval fat body	778 ± 48	4 of 4	1.00	None
Larval trachea	745 ± 18	4 of 4	0.98	None
Larval carcass	1333 ± 104	4 of 4	1.75	Up
S2 cells (growing)	501 ± 7	4 of 4	0.66	Down
Whole fly	761 ± 36	4 of 4

Looking for FBgn0031229. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720