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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031233 through 18771 annotations produced 1 hits



(CG11490):

Annotation Number : CG11490
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031233
Gbrowse : chr2L:207398-210506 (+) // 100.0 //
Probeset : 1627598_at
Accessions : protein= NP_608503;, nucleotide= NM_134659;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005096 // GTPase activator activity // inferred from sequence or structural similarity /// 0005097 // Rab GTPase activa
FlyMine data for FBgn0031233.
BDGP gene expression has embryonic in situ data for CG11490: 4 pix of staining in 1 body parts.
BioGrid reports that CG11490 interacts with CG12001 CG12334 .
TRiP has 1 RNAi stocks for FBgn0031233 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031233 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain139 54 of 4 0.70Down
Head133 24 of 4 0.70Down
Eye122 34 of 4 0.65Down
Thoracicoabdominal ganglion128 44 of 4 0.70Down
Salivary gland235 34 of 4 1.24Up
Crop157 54 of 4 0.80Down
Midgut229 44 of 4 1.20Up
Tubule387 134 of 4 2.00Up
Hindgut199 54 of 4 1.00None
Heart150 14 of 4 0.79Down
Fat body203 224 of 4 1.07None
Ovary323 84 of 4 1.70Up
Testis98 24 of 4 0.50Down
Male accessory glands266 174 of 4 1.40Up
Virgin spermatheca267 104 of 4 1.41Up
Mated spermatheca297 54 of 4 1.56Up
Adult carcass136 84 of 4 0.70Down
Larval CNS175 154 of 4 0.92None
Larval Salivary gland269 154 of 4 1.42Up
Larval midgut255 234 of 4 1.34None
Larval tubule285 54 of 4 1.50Up
Larval hindgut217 124 of 4 1.14None
Larval fat body165 144 of 4 0.90None
Larval trachea140 44 of 4 0.74Down
Larval carcass202 184 of 4 1.06None
S2 cells (growing)250 44 of 4 1.31Up
Whole fly190 104 of 4

Looking for FBgn0031233. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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