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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031239 through 18771 annotations produced 1 hits



(CG17075):

Annotation Number : CG17075
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031239
Gbrowse : chr2L:263781-266688 (-) // 100.0 //
Probeset : 1625452_at
Accessions : protein= NP_608508;, nucleotide= NM_134664;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0031239.
BioGrid reports that CG17075 interacts with CG3779 CG3929 CG6607 .
VDRC has 2 RNAi stocks for FBgn0031239 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 21 of 4 3.10None
Head3 ± 10 of 4 1.70None
Eye6 ± 00 of 4 3.11Up
Thoracicoabdominal ganglion4 ± 10 of 4 2.30None
Salivary gland8 ± 10 of 4 3.89Up
Crop2 ± 10 of 4 1.30None
Midgut4 ± 10 of 4 2.00None
Tubule3 ± 00 of 4 1.60Up
Hindgut2 ± 00 of 4 1.30None
Heart3 ± 20 of 4 1.88None
Fat body7 ± 20 of 4 3.77Up
Ovary1 ± 00 of 4 0.70None
Testis13 ± 13 of 4 6.50Up
Male accessory glands4 ± 10 of 4 2.10None
Virgin spermatheca5 ± 10 of 4 2.43None
Mated spermatheca4 ± 10 of 4 1.93None
Adult carcass3 ± 10 of 4 1.70None
Larval CNS1 ± 00 of 4 0.75None
Larval Salivary gland2 ± 00 of 4 1.35None
Larval midgut2 ± 00 of 4 1.05None
Larval tubule2 ± 10 of 4 1.30None
Larval hindgut3 ± 10 of 4 1.82None
Larval fat body8 ± 20 of 4 4.10None
Larval trachea4 ± 10 of 4 2.28Up
Larval carcass4 ± 10 of 4 2.29None
S2 cells (growing)4 ± 10 of 4 2.30None
Whole fly2 ± 00 of 4

Looking for FBgn0031239. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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