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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031240 through 18771 annotations produced 1 hits



(CG3345):

Annotation Number : CG3345
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031240
Gbrowse : chr2L:269087-271626 (+) // 100.0 //
Probeset : 1624987_at
Accessions : protein= NP_608509;, nucleotide= NM_134665;
FlyMine data for FBgn0031240.
BDGP gene expression has embryonic in situ data for CG3345: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0031240 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 14 of 4 0.10Down
Head2 11 of 4 0.00Down
Eye2 00 of 4 0.02Down
Thoracicoabdominal ganglion6 00 of 4 0.10Down
Salivary gland3 00 of 4 0.02Down
Crop4 10 of 4 0.00Down
Midgut3 10 of 4 0.00Down
Tubule4 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart0 00 of 4 0.00Down
Fat body3 30 of 4 0.03Down
Ovary1 00 of 4 0.00Down
Testis1433 254 of 410.90Up
Male accessory glands6 10 of 4 0.00Down
Virgin spermatheca4 00 of 4 0.04Down
Mated spermatheca6 10 of 4 0.05Down
Adult carcass1 00 of 4 0.00Down
Larval CNS5 10 of 4 0.04Down
Larval Salivary gland4 10 of 4 0.03Down
Larval midgut5 21 of 4 0.04Down
Larval tubule4 00 of 4 0.00Down
Larval hindgut2 10 of 4 0.02Down
Larval fat body162 944 of 4 1.20None
Larval trachea5 51 of 4 0.04Down
Larval carcass3 10 of 4 0.03Down
S2 cells (growing)5 00 of 4 0.04Down
Whole fly131 24 of 4

Looking for FBgn0031240. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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