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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031245 through 18771 annotations produced 1 hits



(CG3625):

Annotation Number : CG3625
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031245
Gbrowse : chr2L:283384-286527 (-) // 100.0 //
Probeset : 1641294_a_at
Accessions : protein= NP_001097046; /// NP_608514; /// NP_722622;, nucleotide= NM_001103576; /// NM_134670; /// NM_164378;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031245.
BDGP gene expression has embryonic in situ data for CG3625: 25 pix of staining in 16 body parts.
BioGrid reports that CG3625 interacts with CG7399 .
VDRC has 2 RNAi stocks for FBgn0031245 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1130 204 of 4 2.60Up
Head1381 394 of 4 3.10Up
Eye1455 684 of 4 3.30Up
Thoracicoabdominal ganglion1355 424 of 4 3.10Up
Salivary gland48 14 of 4 0.11Down
Crop515 204 of 4 1.20None
Midgut2576 674 of 4 5.80Up
Tubule1706 1284 of 4 3.90Up
Hindgut525 144 of 4 1.20Up
Heart1215 424 of 4 2.76Up
Fat body1507 424 of 4 3.42Up
Ovary25 24 of 4 0.10Down
Testis311 24 of 4 0.70Down
Male accessory glands2590 1394 of 4 5.90Up
Virgin spermatheca2054 624 of 4 4.66Up
Mated spermatheca2154 1274 of 4 4.88Up
Adult carcass988 354 of 4 2.20Up
Larval CNS1030 374 of 4 2.34Up
Larval Salivary gland98 54 of 4 0.22Down
Larval midgut1713 314 of 4 3.88Up
Larval tubule1427 674 of 4 3.20Up
Larval hindgut640 344 of 4 1.45Up
Larval fat body2059 2564 of 4 4.70Up
Larval trachea691 1254 of 4 1.57Up
Larval carcass298 114 of 4 0.68Down
S2 cells (growing)117 44 of 4 0.27Down
Whole fly441 244 of 4

Looking for FBgn0031245. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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