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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031247 through 18771 annotations produced 1 hits



(CG11562):

Annotation Number : CG11562
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031247
Gbrowse : chr2L:292465-293222 (+) // 100.0 //
Probeset : 1630529_at
Accessions : protein= NP_608516;, nucleotide= NM_134672;
FlyMine data for FBgn0031247.
BDGP gene expression has embryonic in situ data for CG11562: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031247 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 ± 54 of 4 0.50Down
Head90 ± 94 of 4 0.40Down
Eye142 ± 94 of 4 0.65Down
Thoracicoabdominal ganglion153 ± 84 of 4 0.70Down
Salivary gland123 ± 84 of 4 0.56Down
Crop82 ± 64 of 4 0.40Down
Midgut64 ± 64 of 4 0.30Down
Tubule41 ± 14 of 4 0.20Down
Hindgut139 ± 04 of 4 0.60Down
Heart151 ± 14 of 4 0.68Down
Fat body104 ± 94 of 4 0.47Down
Ovary169 ± 34 of 4 0.80Down
Testis1210 ± 514 of 4 5.50Up
Male accessory glands85 ± 84 of 4 0.40Down
Virgin spermatheca108 ± 44 of 4 0.49Down
Mated spermatheca95 ± 44 of 4 0.43Down
Adult carcass85 ± 54 of 4 0.40Down
Larval CNS135 ± 154 of 4 0.61Down
Larval Salivary gland85 ± 64 of 4 0.39Down
Larval midgut88 ± 74 of 4 0.40Down
Larval tubule69 ± 54 of 4 0.30Down
Larval hindgut182 ± 124 of 4 0.82Down
Larval fat body75 ± 134 of 4 0.30Down
Larval trachea144 ± 134 of 4 0.65Down
Larval carcass123 ± 174 of 4 0.56Down
S2 cells (growing)125 ± 44 of 4 0.57Down
Whole fly221 ± 54 of 4

Looking for FBgn0031247. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime