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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031249 through 18771 annotations produced 1 hits


(CG11911):

Annotation Number : CG11911
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031249
Gbrowse : chr2L:320278-321246 (-) // 100.0 //
Probeset : 1624137_at
Accessions : protein= NP_608518;, nucleotide= NM_134674;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0031249.
BDGP gene expression has embryonic in situ data for CG11911: 4 pix of staining in 1 body parts.
Homophila reports that CG11911 is a close match (5e-11) to human gene IF (NP_000195), a gene associated with C3b inactivator deficiency (3).
BioGrid reports that CG11911 interacts with CG12085 CG4394 .
VDRC has 4 RNAi stocks for FBgn0031249 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 02 of 4 0.00Down
Head10 ± 21 of 4 0.00Down
Eye6 ± 22 of 4 0.01Down
Thoracicoabdominal ganglion6 ± 00 of 4 0.00Down
Salivary gland27 ± 41 of 4 0.02Down
Crop11 ± 21 of 4 0.00Down
Midgut5774 ± 1704 of 4 4.50Up
Tubule7 ± 00 of 4 0.00Down
Hindgut10 ± 00 of 4 0.00Down
Heart6 ± 11 of 4 0.01Down
Fat body12 ± 40 of 4 0.01Down
Ovary3 ± 10 of 4 0.00Down
Testis5 ± 12 of 4 0.00Down
Male accessory glands12 ± 31 of 4 0.00Down
Virgin spermatheca13 ± 32 of 4 0.01Down
Mated spermatheca15 ± 12 of 4 0.01Down
Adult carcass12 ± 50 of 4 0.00Down
Larval CNS10 ± 44 of 4 0.01Down
Larval Salivary gland10 ± 22 of 4 0.01Down
Larval midgut5901 ± 2714 of 4 4.64Up
Larval tubule5 ± 20 of 4 0.00Down
Larval hindgut16 ± 33 of 4 0.01Down
Larval fat body8 ± 30 of 4 0.00Down
Larval trachea7 ± 42 of 4 0.01Down
Larval carcass12 ± 22 of 4 0.01Down
S2 cells (growing)5 ± 10 of 4 0.00Down
Whole fly1270 ± 1604 of 4

Looking for FBgn0031249. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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