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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031250 through 18771 annotations produced 1 hits



chr2L:355558-357868 (-) // 100.0 // (Equilibrative nucleoside transporter 1):

Annotation Number : CG11907
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623516_s_at
Accessions : protein= , nucleotide= NP_608519; /// NP_722628;
Pathway : 0006810 // transport // inferred from electronic annotation
Interpro : 0016020 // membrane // inferred from electronic annotation
FlyMine data for full length.
Homophila reports that CG11907 is a close match (3e-48) to human gene (NP_060814), a gene associated with .
BioGrid reports that CG11907 interacts with CG3303 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain116 34 of 4 0.60Down
Head229 114 of 4 1.20Up
Eye180 134 of 4 0.93None
Thoracicoabdominal ganglion119 34 of 4 0.60Down
Salivary gland262 114 of 4 1.35Up
Crop204 104 of 4 1.10None
Midgut160 54 of 4 0.80Down
Tubule306 84 of 4 1.60Up
Hindgut209 54 of 4 1.10None
Heart442 54 of 4 2.28Up
Fat body911 844 of 4 4.70Up
Ovary236 24 of 4 1.20Up
Testis75 34 of 4 0.40Down
Male accessory glands109 24 of 4 0.60Down
Virgin spermatheca1482 1184 of 4 7.64Up
Mated spermatheca1378 1024 of 4 7.10Up
Adult carcass416 204 of 4 2.10Up
Larval CNS111 84 of 4 0.57Down
Larval Salivary gland174 54 of 4 0.90Down
Larval midgut311 514 of 4 1.60None
Larval tubule740 134 of 4 3.80Up
Larval hindgut277 284 of 4 1.43None
Larval fat body941 804 of 4 4.90Up
Larval trachea122 44 of 4 0.63Down
Larval carcass102 84 of 4 0.53Down
S2 cells (growing)208 54 of 4 1.08None
Whole fly194 54 of 4

Looking for FBgn0031250. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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