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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031253 through 18771 annotations produced 1 hits


Annotation Number : CG11885
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031253
Gbrowse : chr2L:420894-421407 (-) // 98.46 //
Probeset : 1637226_at
Accessions : protein= NP_608522;, nucleotide= NM_134678;
FlyMine data for FBgn0031253.
BioGrid reports that CG11885 interacts with CG13319 CG6667 CG8107 .
VDRC has 1 RNAi stocks for FBgn0031253 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain83 54 of 4 0.40Down
Head100 34 of 4 0.50Down
Eye129 84 of 4 0.69Down
Thoracicoabdominal ganglion97 64 of 4 0.50Down
Salivary gland192 94 of 4 1.02None
Crop159 124 of 4 0.90None
Midgut73 34 of 4 0.40Down
Tubule54 44 of 4 0.30Down
Hindgut85 24 of 4 0.50Down
Heart246 64 of 4 1.31Up
Fat body171 174 of 4 0.91None
Ovary240 34 of 4 1.30Up
Testis364 84 of 4 1.90Up
Male accessory glands319 64 of 4 1.70Up
Virgin spermatheca74 44 of 4 0.40Down
Mated spermatheca90 64 of 4 0.48Down
Adult carcass169 124 of 4 0.90None
Larval CNS219 134 of 4 1.17Up
Larval Salivary gland284 154 of 4 1.51Up
Larval midgut99 114 of 4 0.53Down
Larval tubule267 74 of 4 1.40Up
Larval hindgut157 144 of 4 0.84None
Larval fat body182 134 of 4 1.00None
Larval trachea294 414 of 4 1.56Up
Larval carcass298 264 of 4 1.59Up
S2 cells (growing)256 34 of 4 1.36Up
Whole fly188 94 of 4

Looking for FBgn0031253. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime