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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031258 through 18771 annotations produced 1 hits



(CG4297):

Annotation Number : CG4297
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031258
Gbrowse : chr2L:460514-465607 (-) // 100.0 //
Probeset : 1641597_a_at
Accessions : protein= NP_608527; /// NP_787959;, nucleotide= NM_134683; /// NM_175945;
FlyMine data for FBgn0031258.
BDGP gene expression has embryonic in situ data for CG4297: 15 pix of staining in 3 body parts.
VDRC has 3 RNAi stocks for FBgn0031258 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 04 of 4 1.30Up
Head15 ± 22 of 4 0.90None
Eye8 ± 12 of 4 0.48Down
Thoracicoabdominal ganglion15 ± 34 of 4 0.90None
Salivary gland24 ± 33 of 4 1.35None
Crop21 ± 04 of 4 1.20Up
Midgut8 ± 20 of 4 0.50Down
Tubule10 ± 10 of 4 0.60Down
Hindgut16 ± 52 of 4 0.90None
Heart9 ± 22 of 4 0.52None
Fat body23 ± 74 of 4 1.30None
Ovary6 ± 12 of 4 0.30Down
Testis5 ± 01 of 4 0.30Down
Male accessory glands276 ± 324 of 415.50Up
Virgin spermatheca9 ± 12 of 4 0.52Down
Mated spermatheca9 ± 31 of 4 0.53None
Adult carcass34 ± 54 of 4 1.90Up
Larval CNS6 ± 10 of 4 0.35Down
Larval Salivary gland33 ± 44 of 4 1.87Up
Larval midgut2 ± 00 of 4 0.13Down
Larval tubule20 ± 24 of 4 1.10None
Larval hindgut3 ± 10 of 4 0.20Down
Larval fat body32 ± 54 of 4 1.80None
Larval trachea1 ± 10 of 4 0.11Down
Larval carcass5 ± 20 of 4 0.33Down
S2 cells (growing)51 ± 64 of 4 2.88Up
Whole fly17 ± 03 of 4

Looking for FBgn0031258. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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