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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031260 through 18771 annotations produced 1 hits



shanti (Spp):

Annotation Number : CG11840
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031260
Gbrowse : chr2L:542775-544627 (-) // 100.0 //
Probeset : 1636639_at
Accessions : protein= NP_523444;, nucleotide= NM_078720;
Pathway : 0005783 // endoplasmic reticulum // inferred from direct assay /// 0016021 // integral to membrane // inferred from elec
Interpro : "0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activit
FlyMine data for FBgn0031260.
TRiP has 1 RNAi stocks for FBgn0031260 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031260 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain311 74 of 4 0.60Down
Head469 364 of 4 0.90None
Eye255 294 of 4 0.51Down
Thoracicoabdominal ganglion363 54 of 4 0.70Down
Salivary gland4020 1754 of 4 7.99Up
Crop367 114 of 4 0.70Down
Midgut588 144 of 4 1.20None
Tubule551 714 of 4 1.10None
Hindgut353 104 of 4 0.70Down
Heart604 214 of 4 1.20None
Fat body962 1774 of 4 1.91Up
Ovary487 224 of 4 1.00None
Testis283 24 of 4 0.60Down
Male accessory glands5590 994 of 411.10Up
Virgin spermatheca1811 604 of 4 3.60Up
Mated spermatheca2060 1324 of 4 4.10Up
Adult carcass559 134 of 4 1.10None
Larval CNS471 184 of 4 0.94None
Larval Salivary gland4359 2724 of 4 8.67Up
Larval midgut588 304 of 4 1.17None
Larval tubule475 174 of 4 0.90None
Larval hindgut571 174 of 4 1.14None
Larval fat body818 1334 of 4 1.60None
Larval trachea1019 2484 of 4 2.03Up
Larval carcass874 904 of 4 1.74Up
S2 cells (growing)2018 134 of 4 4.01Up
Whole fly503 354 of 4

Looking for FBgn0031260. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime