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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031264 through 18771 annotations produced 1 hits


Annotation Number : CG11835
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031264
Gbrowse : chr2L:560793-563181 (-) // 100.0 //
Probeset : 1625980_at
Accessions : protein= NP_608532;, nucleotide= NM_134688;
Pathway : DNA-dependent // inferred from sequence or structural similarity"
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity
FlyMine data for FBgn0031264.
BioGrid reports that CG11835 interacts with CG4415 CG8759 .
TRiP has 1 RNAi stocks for FBgn0031264 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 11 of 4 0.60Down
Head38 53 of 4 0.90None
Eye17 21 of 4 0.41Down
Thoracicoabdominal ganglion34 11 of 4 0.80None
Salivary gland76 114 of 4 1.79None
Crop42 24 of 4 1.00None
Midgut45 31 of 4 1.10None
Tubule21 20 of 4 0.50Down
Hindgut62 34 of 4 1.50Up
Heart16 21 of 4 0.40Down
Fat body37 61 of 4 0.89None
Ovary26 11 of 4 0.60Down
Testis35 24 of 4 0.80None
Male accessory glands46 52 of 4 1.10None
Virgin spermatheca39 50 of 4 0.92None
Mated spermatheca40 70 of 4 0.95None
Adult carcass133 234 of 4 3.10Up
Larval CNS33 34 of 4 0.78Down
Larval Salivary gland24 50 of 4 0.57Down
Larval midgut40 21 of 4 0.94None
Larval tubule28 30 of 4 0.70Down
Larval hindgut62 44 of 4 1.45Up
Larval fat body34 41 of 4 0.80None
Larval trachea37 63 of 4 0.89None
Larval carcass718 1274 of 416.84Up
S2 cells (growing)38 53 of 4 0.91None
Whole fly42 24 of 4

Looking for FBgn0031264. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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