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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031268 through 18771 annotations produced 1 hits



coiled (cold):

Annotation Number : CG2813
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031268
Gbrowse : chr2L:574512-575746 (+) // 100.0 //
Probeset : 1639768_at
Accessions : protein= NP_608536;, nucleotide= NM_134692;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031268.
BioGrid reports that CG2813 interacts with CG31006 .
VDRC has 3 RNAi stocks for FBgn0031268 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 04 of 4 0.40Down
Head296 54 of 4 1.10None
Eye432 64 of 4 1.54Up
Thoracicoabdominal ganglion114 34 of 4 0.40Down
Salivary gland909 324 of 4 3.24Up
Crop620 164 of 4 2.20Up
Midgut67 14 of 4 0.20Down
Tubule52 14 of 4 0.20Down
Hindgut562 254 of 4 2.00Up
Heart71 34 of 4 0.26Down
Fat body83 64 of 4 0.30Down
Ovary529 84 of 4 1.90Up
Testis113 54 of 4 0.40Down
Male accessory glands529 244 of 4 1.90Up
Virgin spermatheca304 164 of 4 1.09None
Mated spermatheca460 594 of 4 1.64None
Adult carcass196 64 of 4 0.70Down
Larval CNS173 94 of 4 0.62Down
Larval Salivary gland700 434 of 4 2.50Up
Larval midgut68 44 of 4 0.24Down
Larval tubule55 24 of 4 0.20Down
Larval hindgut700 94 of 4 2.50Up
Larval fat body174 194 of 4 0.60Down
Larval trachea922 534 of 4 3.29Up
Larval carcass433 184 of 4 1.54Up
S2 cells (growing)211 54 of 4 0.75Down
Whole fly280 84 of 4

Looking for FBgn0031268. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime