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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031277 through 18771 annotations produced 1 hits


(CG13947):

Annotation Number : CG13947
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031277
Gbrowse : chr2L:779203-779563 (+) // 100.0 //
Probeset : 1628376_x_at
Accessions : protein= NP_608542;, nucleotide= NM_134698;
FlyMine data for FBgn0031277.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head48 ± 152 of 4 0.10Down
Eye6 ± 20 of 4 0.01Down
Thoracicoabdominal ganglion446 ± 1744 of 4 1.00None
Salivary gland15814 ± 7744 of 435.12Up
Crop2210 ± 2834 of 4 4.90Up
Midgut6 ± 00 of 4 0.00Down
Tubule32 ± 300 of 4 0.10Down
Hindgut12 ± 90 of 4 0.00Down
Heart5 ± 20 of 4 0.01Down
Fat body4 ± 10 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis445 ± 304 of 4 1.00None
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 00 of 4 0.01Down
Mated spermatheca2 ± 00 of 4 0.01Down
Adult carcass2015 ± 5374 of 4 4.50None
Larval CNS4 ± 10 of 4 0.01Down
Larval Salivary gland3340 ± 7474 of 4 7.42Up
Larval midgut6 ± 10 of 4 0.01Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut11 ± 10 of 4 0.03Down
Larval fat body15 ± 20 of 4 0.00Down
Larval trachea4 ± 30 of 4 0.01Down
Larval carcass4 ± 00 of 4 0.01Down
S2 cells (growing)2 ± 00 of 4 0.00Down
Whole fly450 ± 294 of 4

Looking for FBgn0031277. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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