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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031281 through 18771 annotations produced 1 hits



SAGA factor-like TAF6 (Saf6):

Annotation Number : CG3883
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031281
Gbrowse : chr2L:813311-815951 (-) // 100.0 //
Probeset : 1635955_at
Accessions : protein= NP_608545;, nucleotide= NM_134701;
Pathway : 0070461 // SAGA-type complex // inferred from direct assay
FlyMine data for FBgn0031281.
BDGP gene expression has embryonic in situ data for CG3883: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0031281 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 ± 14 of 4 1.20None
Head22 ± 43 of 4 0.60None
Eye25 ± 14 of 4 0.74Down
Thoracicoabdominal ganglion32 ± 14 of 4 0.90None
Salivary gland26 ± 100 of 4 0.76None
Crop23 ± 14 of 4 0.70Down
Midgut21 ± 23 of 4 0.60Down
Tubule25 ± 14 of 4 0.70Down
Hindgut19 ± 14 of 4 0.60Down
Heart19 ± 14 of 4 0.54Down
Fat body19 ± 70 of 4 0.56Down
Ovary55 ± 14 of 4 1.60Up
Testis22 ± 14 of 4 0.60Down
Male accessory glands31 ± 14 of 4 0.90None
Virgin spermatheca11 ± 31 of 4 0.32Down
Mated spermatheca17 ± 31 of 4 0.49Down
Adult carcass19 ± 60 of 4 0.60None
Larval CNS52 ± 44 of 4 1.49Up
Larval Salivary gland33 ± 14 of 4 0.94None
Larval midgut29 ± 34 of 4 0.84None
Larval tubule25 ± 14 of 4 0.70Down
Larval hindgut25 ± 44 of 4 0.72None
Larval fat body18 ± 44 of 4 0.50Down
Larval trachea28 ± 64 of 4 0.82None
Larval carcass20 ± 32 of 4 0.60Down
S2 cells (growing)29 ± 24 of 4 0.85None
Whole fly35 ± 24 of 4

Looking for FBgn0031281. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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