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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031282 through 18771 annotations produced 1 hits



peroxin 12 (pex12):

Annotation Number : CG3639
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031282
Gbrowse : chr2L:816082-816976 (+) // 100.0 //
Probeset : 1631984_at
Accessions : protein= NP_608546;, nucleotide= NM_134702;
Pathway : 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from electr
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0031282.
Homophila reports that CG3639 is a close match (1e-19) to human gene PEX12 (NP_000277), a gene associated with Peroxisome biogenesis factor 12 (3).
VDRC has 1 RNAi stocks for FBgn0031282 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 ± 34 of 4 0.80None
Head54 ± 54 of 4 1.20None
Eye49 ± 14 of 4 1.10None
Thoracicoabdominal ganglion42 ± 44 of 4 0.90None
Salivary gland75 ± 64 of 4 1.67Up
Crop142 ± 44 of 4 3.20Up
Midgut86 ± 34 of 4 1.90Up
Tubule47 ± 24 of 4 1.10None
Hindgut90 ± 34 of 4 2.00Up
Heart85 ± 24 of 4 1.89Up
Fat body76 ± 44 of 4 1.71Up
Ovary72 ± 24 of 4 1.60Up
Testis14 ± 13 of 4 0.30Down
Male accessory glands48 ± 14 of 4 1.10None
Virgin spermatheca67 ± 24 of 4 1.50Up
Mated spermatheca77 ± 74 of 4 1.71Up
Adult carcass94 ± 34 of 4 2.10Up
Larval CNS45 ± 64 of 4 1.00None
Larval Salivary gland58 ± 44 of 4 1.31None
Larval midgut70 ± 34 of 4 1.56Up
Larval tubule69 ± 14 of 4 1.60Up
Larval hindgut46 ± 14 of 4 1.02None
Larval fat body100 ± 54 of 4 2.20Up
Larval trachea49 ± 74 of 4 1.10None
Larval carcass42 ± 34 of 4 0.95None
S2 cells (growing)77 ± 24 of 4 1.73Up
Whole fly45 ± 34 of 4

Looking for FBgn0031282. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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