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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031284 through 18771 annotations produced 1 hits



(CG3876):

Annotation Number : CG3876
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031284
Gbrowse : chr2L:818074-819492 (-) // 100.0 //
Probeset : 1633099_at
Accessions : protein= NP_608548;, nucleotide= NM_134704;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // inferred from sequence
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // inferred
FlyMine data for FBgn0031284.
BDGP gene expression has embryonic in situ data for CG3876: 8 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0031284 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain221 ± 74 of 4 2.70Up
Head96 ± 64 of 4 1.20None
Eye144 ± 24 of 4 1.73Up
Thoracicoabdominal ganglion155 ± 74 of 4 1.90Up
Salivary gland103 ± 74 of 4 1.24None
Crop76 ± 54 of 4 0.90None
Midgut68 ± 14 of 4 0.80Down
Tubule77 ± 24 of 4 0.90Down
Hindgut59 ± 24 of 4 0.70Down
Heart68 ± 34 of 4 0.83Down
Fat body31 ± 54 of 4 0.37Down
Ovary141 ± 44 of 4 1.70Up
Testis14 ± 14 of 4 0.20Down
Male accessory glands75 ± 84 of 4 0.90None
Virgin spermatheca48 ± 34 of 4 0.58Down
Mated spermatheca56 ± 44 of 4 0.68Down
Adult carcass43 ± 24 of 4 0.50Down
Larval CNS72 ± 34 of 4 0.87Down
Larval Salivary gland130 ± 144 of 4 1.56Up
Larval midgut59 ± 14 of 4 0.71Down
Larval tubule69 ± 24 of 4 0.80Down
Larval hindgut33 ± 24 of 4 0.41Down
Larval fat body61 ± 64 of 4 0.70Down
Larval trachea91 ± 164 of 4 1.10None
Larval carcass50 ± 34 of 4 0.60Down
S2 cells (growing)134 ± 44 of 4 1.62Up
Whole fly83 ± 34 of 4

Looking for FBgn0031284. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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