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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031292 through 18771 annotations produced 1 hits



(CG15824):

Annotation Number : CG15824
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031292
Gbrowse : chr2L:878174-885052 (-) // 100.0 //
Probeset : 1635201_at
Accessions : protein= NP_608555;, nucleotide= NM_134711;
FlyMine data for FBgn0031292.
VDRC has 3 RNAi stocks for FBgn0031292 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.20Down
Head8 ± 12 of 4 0.40Down
Eye3 ± 01 of 4 0.16Down
Thoracicoabdominal ganglion6 ± 11 of 4 0.30Down
Salivary gland16 ± 71 of 4 0.71None
Crop1 ± 00 of 4 0.10Down
Midgut7 ± 10 of 4 0.30Down
Tubule6 ± 00 of 4 0.30Down
Hindgut1 ± 00 of 4 0.10Down
Heart5 ± 11 of 4 0.23Down
Fat body3 ± 20 of 4 0.16Down
Ovary1 ± 00 of 4 0.10Down
Testis364 ± 44 of 416.20Up
Male accessory glands9 ± 21 of 4 0.40Down
Virgin spermatheca5 ± 10 of 4 0.23Down
Mated spermatheca6 ± 01 of 4 0.28Down
Adult carcass5 ± 20 of 4 0.30Down
Larval CNS2 ± 10 of 4 0.09Down
Larval Salivary gland4 ± 10 of 4 0.21Down
Larval midgut11 ± 20 of 4 0.49Down
Larval tubule9 ± 22 of 4 0.40Down
Larval hindgut3 ± 10 of 4 0.15Down
Larval fat body54 ± 283 of 4 2.40None
Larval trachea3 ± 30 of 4 0.17Down
Larval carcass3 ± 00 of 4 0.18Down
S2 cells (growing)5 ± 01 of 4 0.22Down
Whole fly22 ± 14 of 4

Looking for FBgn0031292. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime