FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031294 through 18771 annotations produced 2 hits

ia2 (ia2):

Annotation Number : CG31795
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031294
Gbrowse : chr2L:1011420-1048053 (-) // 100.0 //
Probeset : 1637378_s_at
Accessions : protein= NP_608562; /// NP_722672;, nucleotide= NM_134718; /// NM_164401;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0031294.
Homophila reports that CG31795 is a close match (8e-31) to human gene NS1;PTP2C;PTPN11;SHP2 (NP_002825), a gene associated with Leopard syndrome, 151100 (3);Leukemia, juvenile myelomonocytic, 607785 (3);Noonan syndrome 1, 163950 (3).
TRiP has 1 RNAi stocks for FBgn0031294 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031294 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2483 ± 132	4 of 4	9.10	Up
Head	1535 ± 156	4 of 4	5.60	Up
Eye	264 ± 36	4 of 4	0.97	None
Thoracicoabdominal ganglion	2400 ± 48	4 of 4	8.80	Up
Salivary gland	15 ± 1	2 of 4	0.06	Down
Crop	110 ± 5	4 of 4	0.40	Down
Midgut	221 ± 4	4 of 4	0.80	None
Tubule	3 ± 1	0 of 4	0.00	Down
Hindgut	67 ± 2	4 of 4	0.20	Down
Heart	743 ± 135	4 of 4	2.72	Up
Fat body	22 ± 6	4 of 4	0.08	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	38 ± 6	4 of 4	0.10	Down
Male accessory glands	331 ± 12	4 of 4	1.20	None
Virgin spermatheca	13 ± 2	4 of 4	0.05	Down
Mated spermatheca	18 ± 4	4 of 4	0.07	Down
Adult carcass	106 ± 26	4 of 4	0.40	Down
Larval CNS	698 ± 76	4 of 4	2.55	Up
Larval Salivary gland	4 ± 2	0 of 4	0.02	Down
Larval midgut	119 ± 28	4 of 4	0.44	Down
Larval tubule	2 ± 0	0 of 4	0.00	Down
Larval hindgut	34 ± 6	4 of 4	0.13	Down
Larval fat body	0 ± 0	0 of 4	0.00	Down
Larval trachea	15 ± 7	4 of 4	0.06	Down
Larval carcass	27 ± 3	4 of 4	0.10	Down
S2 cells (growing)	0 ± 0	0 of 4	0.00	Down
Whole fly	273 ± 46	4 of 4

ia2 (ia2):

Annotation Number : CT31644
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031294
Gbrowse : chr2L:1033539-1043197 (-) // 100.0 //
Probeset : 1635042_s_at
Accessions : protein= NP_608562; /// NP_722672;, nucleotide= NM_134718; /// NM_164401;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0031294.
TRiP has 1 RNAi stocks for FBgn0031294 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031294 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	44 ± 4	4 of 4	9.50	Up
Head	14 ± 3	1 of 4	3.00	None
Eye	2 ± 0	0 of 4	0.50	None
Thoracicoabdominal ganglion	20 ± 5	4 of 4	4.50	None
Salivary gland	11 ± 4	0 of 4	2.53	None
Crop	5 ± 2	2 of 4	1.20	None
Midgut	6 ± 2	0 of 4	1.30	None
Tubule	2 ± 0	0 of 4	0.60	Down
Hindgut	5 ± 1	0 of 4	1.20	None
Heart	5 ± 2	0 of 4	1.25	None
Fat body	4 ± 1	0 of 4	0.87	None
Ovary	5 ± 0	0 of 4	1.10	None
Testis	5 ± 1	0 of 4	1.10	None
Male accessory glands	18 ± 5	1 of 4	4.00	None
Virgin spermatheca	3 ± 1	0 of 4	0.84	None
Mated spermatheca	4 ± 1	0 of 4	0.95	None
Adult carcass	10 ± 1	0 of 4	2.20	Up
Larval CNS	3 ± 3	0 of 4	0.73	None
Larval Salivary gland	10 ± 1	0 of 4	2.31	None
Larval midgut	5 ± 2	0 of 4	1.13	None
Larval tubule	4 ± 1	0 of 4	1.00	None
Larval hindgut	5 ± 2	0 of 4	1.07	None
Larval fat body	4 ± 2	0 of 4	0.80	None
Larval trachea	2 ± 1	0 of 4	0.44	None
Larval carcass	4 ± 1	0 of 4	0.92	None
S2 cells (growing)	1 ± 0	0 of 4	0.22	None
Whole fly	4 ± 1	0 of 4

Looking for FBgn0031294. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720