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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031295 through 18771 annotations produced 1 hits


Annotation Number : CG4375
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031295
Gbrowse : chr2L:1026106-1026897 (-) // 100.0 //
Probeset : 1625915_at
Accessions : protein= NP_722673;, nucleotide= NM_164402;
FlyMine data for FBgn0031295.
BDGP gene expression has embryonic in situ data for CG4375: 2 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0031295 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00Down
Head5 00 of 4 0.00Down
Eye1 00 of 4 0.01Down
Thoracicoabdominal ganglion2 11 of 4 0.00Down
Salivary gland12 21 of 4 0.04Down
Crop4 11 of 4 0.00Down
Midgut12 14 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut5 00 of 4 0.00Down
Heart3 10 of 4 0.01Down
Fat body2 20 of 4 0.01Down
Ovary2 00 of 4 0.00Down
Testis2476 514 of 4 7.30Up
Male accessory glands7 20 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.00Down
Mated spermatheca3 11 of 4 0.01Down
Adult carcass21 43 of 4 0.10Down
Larval CNS2 22 of 4 0.01Down
Larval Salivary gland4 10 of 4 0.01Down
Larval midgut7 11 of 4 0.02Down
Larval tubule6 00 of 4 0.00Down
Larval hindgut5 21 of 4 0.02Down
Larval fat body411 2004 of 4 1.20None
Larval trachea18 201 of 4 0.05Down
Larval carcass7 11 of 4 0.02Down
S2 cells (growing)4 11 of 4 0.01Down
Whole fly338 344 of 4

Looking for FBgn0031295. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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