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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031298 through 18771 annotations produced 1 hits



Autophagy-specific gene 4 (Atg4):

Annotation Number : CG4428
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031298
Gbrowse : chr2L:1080912-1083384 (+) // 100.0 //
Probeset : 1641676_at
Accessions : protein= NP_608563;, nucleotide= NM_134719;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from sequence or structural similarity /// 0005515 // protei
FlyMine data for FBgn0031298.
BDGP gene expression has embryonic in situ data for CG4428: 4 pix of staining in 1 body parts.
TRiP has 3 RNAi stocks for FBgn0031298 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031298 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain124 84 of 4 0.80None
Head210 154 of 4 1.30Up
Eye188 54 of 4 1.16Up
Thoracicoabdominal ganglion151 84 of 4 0.90None
Salivary gland159 124 of 4 0.98None
Crop196 34 of 4 1.20Up
Midgut236 54 of 4 1.40Up
Tubule281 14 of 4 1.70Up
Hindgut170 24 of 4 1.00None
Heart275 114 of 4 1.69Up
Fat body464 184 of 4 2.84Up
Ovary215 34 of 4 1.30Up
Testis43 24 of 4 0.30Down
Male accessory glands173 44 of 4 1.10None
Virgin spermatheca768 194 of 4 4.71Up
Mated spermatheca611 314 of 4 3.75Up
Adult carcass300 144 of 4 1.80Up
Larval CNS163 94 of 4 1.00None
Larval Salivary gland279 154 of 4 1.71Up
Larval midgut301 354 of 4 1.85Up
Larval tubule414 84 of 4 2.50Up
Larval hindgut231 194 of 4 1.42Up
Larval fat body451 424 of 4 2.80Up
Larval trachea194 44 of 4 1.19Up
Larval carcass392 454 of 4 2.41Up
S2 cells (growing)281 64 of 4 1.73Up
Whole fly163 44 of 4

Looking for FBgn0031298. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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