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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031299 through 18771 annotations produced 2 hits



(CG4629):

Annotation Number : S.C2L000151
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031299
Gbrowse : chr2L:1087694-1098633 (-) // 100.0 //
Probeset : 1628886_at
Accessions : protein= NP_001162851; /// NP_608564; /// NP_722676; /// NP_995610;, nucleotide= NM_001169380; /// NM_134720; /// NM_164404; /// NM_205888;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0031299.
BDGP gene expression has embryonic in situ data for CG4629: 21 pix of staining in 4 body parts.
TRiP has 1 RNAi stocks for FBgn0031299 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031299 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.60None
Head0 00 of 4 0.20None
Eye1 00 of 4 0.68None
Thoracicoabdominal ganglion1 00 of 4 0.60None
Salivary gland1 00 of 4 0.54None
Crop1 00 of 4 0.60None
Midgut4 10 of 4 1.50None
Tubule2 00 of 4 0.70Down
Hindgut3 20 of 4 1.20None
Heart1 00 of 4 0.39None
Fat body2 30 of 4 0.98None
Ovary1 00 of 4 0.50None
Testis1 00 of 4 0.50None
Male accessory glands3 10 of 4 1.30None
Virgin spermatheca1 00 of 4 0.36None
Mated spermatheca0 00 of 4 0.28None
Adult carcass3 10 of 4 1.10None
Larval CNS0 00 of 4 0.23None
Larval Salivary gland1 00 of 4 0.50None
Larval midgut2 00 of 4 0.95None
Larval tubule5 10 of 4 1.90None
Larval hindgut1 00 of 4 0.38None
Larval fat body1 00 of 4 0.60None
Larval trachea3 20 of 4 1.03None
Larval carcass2 00 of 4 0.84None
S2 cells (growing)1 00 of 4 0.62None
Whole fly2 10 of 4



(CG4629):

Annotation Number : CG4629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031299
Gbrowse : chr2L:1083089-1102506 (-) // 100.0 //
Probeset : 1623838_s_at
Accessions : protein= NP_001162851; /// NP_608564; /// NP_722676; /// NP_995610;, nucleotide= NM_001169380; /// NM_134720; /// NM_164404; /// NM_205888;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0031299.
BDGP gene expression has embryonic in situ data for CG4629: 21 pix of staining in 4 body parts.
Homophila reports that CG4629 is a close match (9e-11) to human gene MEN2A;RET (NP_065681), a gene associated with Central hypoventilation syndrome, congenital, 209880 (3);Hirschsprung disease, 142623 (3);Medullary thyroid carcinoma, 155240 (3);Multiple endocrine neoplasia IIA, 171400 (3);Multiple endocrine neoplasia IIB, 162300 (3);Pheochromocytoma, 171300 (3);Renal agenesis, 191830 (3).
TRiP has 1 RNAi stocks for FBgn0031299 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031299 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain752 124 of 4 7.60Up
Head358 264 of 4 3.60Up
Eye530 654 of 4 5.33Up
Thoracicoabdominal ganglion704 164 of 4 7.10Up
Salivary gland86 94 of 4 0.87None
Crop69 34 of 4 0.70Down
Midgut63 34 of 4 0.60Down
Tubule385 114 of 4 3.90Up
Hindgut278 104 of 4 2.80Up
Heart155 74 of 4 1.56Up
Fat body217 94 of 4 2.19Up
Ovary20 34 of 4 0.20Down
Testis37 24 of 4 0.40Down
Male accessory glands174 64 of 4 1.70Up
Virgin spermatheca167 114 of 4 1.68Up
Mated spermatheca124 114 of 4 1.25None
Adult carcass171 54 of 4 1.70Up
Larval CNS328 214 of 4 3.30Up
Larval Salivary gland35 24 of 4 0.35Down
Larval midgut126 94 of 4 1.27None
Larval tubule162 74 of 4 1.60Up
Larval hindgut47 14 of 4 0.47Down
Larval fat body64 44 of 4 0.60Down
Larval trachea32 194 of 4 0.33Down
Larval carcass50 34 of 4 0.51Down
S2 cells (growing)18 14 of 4 0.18Down
Whole fly99 64 of 4

Looking for FBgn0031299. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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