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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031301 through 18771 annotations produced 1 hits



/// (CG14339 /// DsecGM16790):

Annotation Number : CG14339
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031301
Gbrowse : chr2L:1108538-1112702 (+) // 100.0 //
Probeset : 1640988_at
Accessions : protein= NP_608566;, nucleotide= NM_134722;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0031301.
BioGrid reports that CG14339 interacts with CG9238 .
VDRC has 2 RNAi stocks for FBgn0031301 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.20Down
Head2 ± 10 of 4 0.20Down
Eye2 ± 10 of 4 0.16Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.40Down
Salivary gland7 ± 10 of 4 0.52Down
Crop3 ± 10 of 4 0.20Down
Midgut14 ± 20 of 4 0.90None
Tubule2 ± 00 of 4 0.20Down
Hindgut5 ± 10 of 4 0.30Down
Heart4 ± 10 of 4 0.32Down
Fat body5 ± 00 of 4 0.35Down
Ovary2 ± 00 of 4 0.20Down
Testis196 ± 74 of 412.90Up
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca2 ± 10 of 4 0.17Down
Mated spermatheca2 ± 10 of 4 0.19Down
Adult carcass4 ± 20 of 4 0.30Down
Larval CNS2 ± 10 of 4 0.14Down
Larval Salivary gland1 ± 10 of 4 0.10Down
Larval midgut21 ± 33 of 4 1.42None
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut4 ± 00 of 4 0.29Down
Larval fat body29 ± 113 of 4 1.90None
Larval trachea4 ± 22 of 4 0.28Down
Larval carcass1 ± 00 of 4 0.09Down
S2 cells (growing)20 ± 14 of 4 1.35Up
Whole fly15 ± 13 of 4

Looking for FBgn0031301. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime