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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031307 through 18771 annotations produced 1 hits


Annotation Number : CG4726
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031307
Gbrowse : chr2L:1143202-1147395 (+) // 100.0 //
Probeset : 1637772_at
Accessions : protein= NP_608572;, nucleotide= NM_134728;
Interpro : 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from sequence or structural similarit
FlyMine data for FBgn0031307.
BDGP gene expression has embryonic in situ data for CG4726: 30 pix of staining in 17 body parts.
Homophila reports that CG4726 is a close match (6e-64) to human gene DFNA25;SLC17A8;VGLUT3 (NP_647480), a gene associated with Deafness, autosomal dominant 25, 605583 (3).
VDRC has 1 RNAi stocks for FBgn0031307 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 24 of 4 1.10None
Head17 10 of 4 0.60Down
Eye6 21 of 4 0.21Down
Thoracicoabdominal ganglion57 24 of 4 1.80Up
Salivary gland4 00 of 4 0.14Down
Crop682 54 of 421.20Up
Midgut16 00 of 4 0.50Down
Tubule14 90 of 4 0.40None
Hindgut1180 274 of 436.70Up
Heart117 14 of 4 3.64Up
Fat body6 50 of 4 0.22Down
Ovary1 00 of 4 0.00Down
Testis2 00 of 4 0.10Down
Male accessory glands5 20 of 4 0.20Down
Virgin spermatheca20 30 of 4 0.64None
Mated spermatheca22 20 of 4 0.71None
Adult carcass40 40 of 4 1.20None
Larval CNS1567 1814 of 448.75Up
Larval Salivary gland242 154 of 4 7.54Up
Larval midgut296 154 of 4 9.23Up
Larval tubule32 33 of 4 1.00None
Larval hindgut724 814 of 422.53Up
Larval fat body24 30 of 4 0.70None
Larval trachea630 1124 of 419.61Up
Larval carcass2840 2474 of 488.36Up
S2 cells (growing)605 414 of 418.85Up
Whole fly32 43 of 4

Looking for FBgn0031307. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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