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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031308 through 18771 annotations produced 1 hits



(CG4749):

Annotation Number : CG4749
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031308
Gbrowse : chr2L:1147832-1149449 (+) // 99.69 //
Probeset : 1627204_at
Accessions : protein= NP_608573;, nucleotide= NM_134729;
FlyMine data for FBgn0031308.
BDGP gene expression has embryonic in situ data for CG4749: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0031308 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain56 ± 24 of 4 0.70Down
Head54 ± 14 of 4 0.70Down
Eye49 ± 54 of 4 0.61Down
Thoracicoabdominal ganglion76 ± 24 of 4 0.90None
Salivary gland63 ± 44 of 4 0.78Down
Crop91 ± 14 of 4 1.10None
Midgut57 ± 34 of 4 0.70Down
Tubule53 ± 34 of 4 0.70Down
Hindgut70 ± 44 of 4 0.90None
Heart56 ± 34 of 4 0.70Down
Fat body58 ± 104 of 4 0.71Down
Ovary119 ± 54 of 4 1.50Up
Testis15 ± 11 of 4 0.20Down
Male accessory glands95 ± 44 of 4 1.20None
Virgin spermatheca61 ± 14 of 4 0.75Down
Mated spermatheca64 ± 54 of 4 0.79None
Adult carcass54 ± 34 of 4 0.70Down
Larval CNS94 ± 14 of 4 1.16None
Larval Salivary gland86 ± 54 of 4 1.06None
Larval midgut58 ± 74 of 4 0.72Down
Larval tubule62 ± 54 of 4 0.80Down
Larval hindgut94 ± 34 of 4 1.16None
Larval fat body70 ± 44 of 4 0.90None
Larval trachea84 ± 84 of 4 1.04None
Larval carcass76 ± 54 of 4 0.94None
S2 cells (growing)68 ± 24 of 4 0.84None
Whole fly81 ± 54 of 4

Looking for FBgn0031308. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime