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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031310 through 18771 annotations produced 1 hits



(CG4764):

Annotation Number : CG4764
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031310
Gbrowse : chr2L:1150782-1151764 (+) // 100.0 //
Probeset : 1629155_at
Accessions : protein= NP_608575;, nucleotide= NM_134731;
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from ele
FlyMine data for FBgn0031310.
BDGP gene expression has embryonic in situ data for CG4764: 15 pix of staining in 5 body parts.
BioGrid reports that CG4764 interacts with CG5625 CG8449 .
TRiP has 1 RNAi stocks for FBgn0031310 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031310 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain174 ± 64 of 4 1.10None
Head141 ± 84 of 4 0.90None
Eye144 ± 34 of 4 0.90None
Thoracicoabdominal ganglion155 ± 94 of 4 1.00None
Salivary gland217 ± 134 of 4 1.36Up
Crop219 ± 114 of 4 1.40Up
Midgut175 ± 84 of 4 1.10None
Tubule122 ± 44 of 4 0.80Down
Hindgut178 ± 54 of 4 1.10None
Heart265 ± 154 of 4 1.66Up
Fat body110 ± 154 of 4 0.69Down
Ovary242 ± 64 of 4 1.50Up
Testis222 ± 64 of 4 1.40Up
Male accessory glands282 ± 14 of 4 1.80Up
Virgin spermatheca82 ± 44 of 4 0.51Down
Mated spermatheca77 ± 44 of 4 0.48Down
Adult carcass135 ± 24 of 4 0.80None
Larval CNS248 ± 284 of 4 1.55Up
Larval Salivary gland236 ± 124 of 4 1.48Up
Larval midgut161 ± 54 of 4 1.01None
Larval tubule281 ± 54 of 4 1.80Up
Larval hindgut203 ± 74 of 4 1.27Up
Larval fat body161 ± 124 of 4 1.00None
Larval trachea152 ± 224 of 4 0.95None
Larval carcass136 ± 94 of 4 0.85None
S2 cells (growing)559 ± 124 of 4 3.49Up
Whole fly160 ± 84 of 4

Looking for FBgn0031310. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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