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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031314 through 18771 annotations produced 1 hits



(CG4785):

Annotation Number : CG4785
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031314
Gbrowse : chr2L:1164469-1166432 (+) // 100.0 //
Probeset : 1626247_at
Accessions : protein= NP_608579;, nucleotide= NM_134735;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031314.
BDGP gene expression has embryonic in situ data for CG4785: 4 pix of staining in 1 body parts.
BioGrid reports that CG4785 interacts with CG5642 CG5502 CG9075 .
TRiP has 1 RNAi stocks for FBgn0031314 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031314 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 24 of 4 0.70Down
Head21 ± 13 of 4 0.50Down
Eye25 ± 34 of 4 0.53Down
Thoracicoabdominal ganglion44 ± 34 of 4 0.90None
Salivary gland37 ± 43 of 4 0.80None
Crop30 ± 14 of 4 0.70Down
Midgut28 ± 30 of 4 0.60Down
Tubule30 ± 14 of 4 0.60Down
Hindgut30 ± 22 of 4 0.70Down
Heart17 ± 13 of 4 0.37Down
Fat body20 ± 32 of 4 0.44Down
Ovary93 ± 24 of 4 2.00Up
Testis15 ± 04 of 4 0.30Down
Male accessory glands59 ± 24 of 4 1.30Up
Virgin spermatheca20 ± 24 of 4 0.44Down
Mated spermatheca17 ± 14 of 4 0.37Down
Adult carcass23 ± 20 of 4 0.50Down
Larval CNS83 ± 84 of 4 1.78Up
Larval Salivary gland53 ± 34 of 4 1.13None
Larval midgut24 ± 20 of 4 0.52Down
Larval tubule34 ± 14 of 4 0.70Down
Larval hindgut28 ± 12 of 4 0.60Down
Larval fat body23 ± 11 of 4 0.50Down
Larval trachea38 ± 64 of 4 0.81None
Larval carcass35 ± 14 of 4 0.75Down
S2 cells (growing)84 ± 14 of 4 1.79Up
Whole fly47 ± 22 of 4

Looking for FBgn0031314. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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