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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031315 through 18771 annotations produced 2 hits



(CG14341):

Annotation Number : CG14341
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031315
Gbrowse : chr2L:1166559-1167213 (+) // 100.0 //
Probeset : 1632717_a_at
Accessions : protein= NP_608580; /// NP_722686;, nucleotide= NM_134736; /// NM_164407;
FlyMine data for FBgn0031315.
BDGP gene expression has embryonic in situ data for CG14341: 4 pix of staining in 1 body parts.
BioGrid reports that CG14341 interacts with CG15631 CG2199 CG4183 .
VDRC has 2 RNAi stocks for FBgn0031315 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain182 44 of 4 1.50Up
Head162 54 of 4 1.40Up
Eye303 184 of 4 2.56Up
Thoracicoabdominal ganglion215 64 of 4 1.80Up
Salivary gland178 44 of 4 1.51Up
Crop168 124 of 4 1.40Up
Midgut79 34 of 4 0.70Down
Tubule51 54 of 4 0.40Down
Hindgut132 64 of 4 1.10None
Heart151 34 of 4 1.27Up
Fat body154 184 of 4 1.30Up
Ovary173 24 of 4 1.50Up
Testis78 44 of 4 0.70Down
Male accessory glands272 64 of 4 2.30Up
Virgin spermatheca148 24 of 4 1.25Up
Mated spermatheca180 104 of 4 1.52Up
Adult carcass133 64 of 4 1.10None
Larval CNS168 94 of 4 1.42Up
Larval Salivary gland271 124 of 4 2.29Up
Larval midgut72 44 of 4 0.61Down
Larval tubule122 54 of 4 1.00None
Larval hindgut184 44 of 4 1.55Up
Larval fat body214 164 of 4 1.80Up
Larval trachea220 164 of 4 1.86Up
Larval carcass198 124 of 4 1.67Up
S2 cells (growing)226 24 of 4 1.91Up
Whole fly118 54 of 4



(CG14341):

Annotation Number : CG14341
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031315
Gbrowse : chr2L:1166559-1167213 (+) // 100.0 //
Probeset : 1626149_at
Accessions : protein= NP_608580; /// NP_722686;, nucleotide= NM_134736; /// NM_164407;
FlyMine data for FBgn0031315.
BDGP gene expression has embryonic in situ data for CG14341: 4 pix of staining in 1 body parts.
BioGrid reports that CG14341 interacts with CG15631 CG2199 CG4183 .
VDRC has 2 RNAi stocks for FBgn0031315 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.70None
Head3 10 of 4 1.30None
Eye1 00 of 4 0.59None
Thoracicoabdominal ganglion2 00 of 4 1.00None
Salivary gland8 42 of 4 3.13None
Crop3 10 of 4 1.10None
Midgut2 00 of 4 0.80None
Tubule3 00 of 4 1.20Up
Hindgut2 11 of 4 0.90None
Heart2 10 of 4 0.83None
Fat body2 20 of 4 0.90None
Ovary1 00 of 4 0.50None
Testis1 01 of 4 0.70None
Male accessory glands4 10 of 4 1.80None
Virgin spermatheca1 00 of 4 0.48None
Mated spermatheca1 00 of 4 0.54None
Adult carcass1 00 of 4 0.70None
Larval CNS2 00 of 4 0.88None
Larval Salivary gland3 10 of 4 1.20None
Larval midgut0 00 of 4 0.28Down
Larval tubule0 00 of 4 0.30Down
Larval hindgut1 00 of 4 0.38Down
Larval fat body8 12 of 4 3.20Up
Larval trachea1 10 of 4 0.62None
Larval carcass3 00 of 4 1.34None
S2 cells (growing)2 00 of 4 0.94None
Whole fly2 00 of 4

Looking for FBgn0031315. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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