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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031319 through 18771 annotations produced 1 hits



(CG4896):

Annotation Number : CG4896
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031319
Gbrowse : chr2L:1177705-1182454 (+) // 100.0 //
Probeset : 1632876_a_at
Accessions : protein= NP_608583; /// NP_722689; /// NP_722691;, nucleotide= NM_134739; /// NM_164409; /// NM_164411;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0031319.
BDGP gene expression has embryonic in situ data for CG4896: 4 pix of staining in 1 body parts.
BioGrid reports that CG4896 interacts with CG5792 CG5105 CG5692 CG6253 CG6779 CG8385 CG9908 CG9930 .
VDRC has 3 RNAi stocks for FBgn0031319 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain349 ± 44 of 4 3.70Up
Head96 ± 54 of 4 1.00None
Eye119 ± 24 of 4 1.28Up
Thoracicoabdominal ganglion301 ± 144 of 4 3.20Up
Salivary gland96 ± 74 of 4 1.03None
Crop112 ± 34 of 4 1.20Up
Midgut78 ± 24 of 4 0.80Down
Tubule118 ± 44 of 4 1.30Up
Hindgut75 ± 54 of 4 0.80Down
Heart76 ± 74 of 4 0.82None
Fat body84 ± 124 of 4 0.91None
Ovary143 ± 74 of 4 1.50Up
Testis216 ± 114 of 4 2.30Up
Male accessory glands1053 ± 154 of 411.30Up
Virgin spermatheca182 ± 114 of 4 1.95Up
Mated spermatheca159 ± 64 of 4 1.71Up
Adult carcass94 ± 24 of 4 1.00None
Larval CNS202 ± 114 of 4 2.16Up
Larval Salivary gland78 ± 54 of 4 0.84None
Larval midgut57 ± 34 of 4 0.61Down
Larval tubule96 ± 24 of 4 1.00None
Larval hindgut69 ± 54 of 4 0.74Down
Larval fat body126 ± 174 of 4 1.40None
Larval trachea107 ± 34 of 4 1.15Up
Larval carcass154 ± 64 of 4 1.65Up
S2 cells (growing)123 ± 34 of 4 1.32Up
Whole fly93 ± 34 of 4

Looking for FBgn0031319. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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