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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031320 through 18771 annotations produced 1 hits



(CG5126):

Annotation Number : CG5126
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031320
Gbrowse : chr2L:1182290-1184021 (-) // 100.0 //
Probeset : 1628309_at
Accessions : protein= NP_608584;, nucleotide= NM_134740;
FlyMine data for FBgn0031320.
BDGP gene expression has embryonic in situ data for CG5126: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0031320 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 14 of 4 0.50Down
Head95 54 of 4 0.80None
Eye49 34 of 4 0.44Down
Thoracicoabdominal ganglion54 34 of 4 0.50Down
Salivary gland123 64 of 4 1.09None
Crop111 44 of 4 1.00None
Midgut224 134 of 4 2.00Up
Tubule328 564 of 4 2.90Up
Hindgut95 24 of 4 0.80Down
Heart103 94 of 4 0.91None
Fat body190 164 of 4 1.69Up
Ovary129 34 of 4 1.10Up
Testis17 24 of 4 0.20Down
Male accessory glands168 124 of 4 1.50Up
Virgin spermatheca199 14 of 4 1.76Up
Mated spermatheca166 54 of 4 1.47Up
Adult carcass155 64 of 4 1.40Up
Larval CNS102 104 of 4 0.91None
Larval Salivary gland296 444 of 4 2.62Up
Larval midgut120 84 of 4 1.07None
Larval tubule178 44 of 4 1.60Up
Larval hindgut79 44 of 4 0.70Down
Larval fat body153 154 of 4 1.40None
Larval trachea86 64 of 4 0.77Down
Larval carcass85 34 of 4 0.75Down
S2 cells (growing)28 14 of 4 0.25Down
Whole fly113 44 of 4

Looking for FBgn0031320. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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